Adam M. Phillippy

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	Wszystkie	Od 2020
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Sergey KorenAssociate Investigator, NHGRI/NIHZweryfikowany adres z nih.gov
Arang RhieStaff Scientist, NHGRI, NIHZweryfikowany adres z nih.gov
Steven SalzbergBloomberg Distinguished Professor, Johns Hopkins UniversityZweryfikowany adres z jhu.edu
Nicholas BergmanDirector, National Biodefense Analysis and Countermeasures CenterZweryfikowany adres z st.dhs.gov
Todd J. TreangenAssociate Professor, Department of Computer Science, Rice UniversityZweryfikowany adres z rice.edu
Brian OndovYale School of MedicineZweryfikowany adres z yale.edu
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityZweryfikowany adres z cs.jhu.edu
Timothy P. SmithUSDA/ARS U.S. Meat Animal Research CenterZweryfikowany adres z ars.usda.gov
Chirag JainIndian Institute of ScienceZweryfikowany adres z iisc.ac.in
Mihai PopProfessor of Computer Science, University of Maryland, College ParkZweryfikowany adres z umd.edu
Erich JarvisRockefeller University, Duke University, HHMIZweryfikowany adres z rockefeller.edu
Evan EichlerProfessor of Genome Sciences, University of WashingtonZweryfikowany adres z gs.washington.edu
Konstantin BerlinCiscoZweryfikowany adres z cisco.com
Alexander T DiltheyInstitute of Medical Microbiology, University Hospital of DusseldorfZweryfikowany adres z med.uni-duesseldorf.de
Glennis LogsdonUniversity of PennsylvaniaZweryfikowany adres z pennmedicine.upenn.edu
Karen H MigaAssistant Professor; Associate Director, UC Santa Cruz Genomics Institute, University of CaliforniaZweryfikowany adres z ucsc.edu
Jason ChinFoundation of Biological Data ScienceZweryfikowany adres z infoecho.net

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Adam M. Phillippy

Director, Center for Genomics and Data Science Research, NHGRI, NIH

Zweryfikowany adres z nih.gov - Strona główna

Genomics Computer Science Bioinformatics Genome Assembly Sequence Analysis


Tytuł Sortuj wg cytatów Sortuj wg roku Sortuj wg tytułu	Cytowane przez Cytowane przez	Rok
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation S Koren, BP Walenz, K Berlin, JR Miller, NH Bergman, AM Phillippy Genome research 27 (5), 722-736, 2017	6655	2017
Versatile and open software for comparing large genomes S Kurtz, A Phillippy, AL Delcher, M Smoot, M Shumway, C Antonescu, ... Genome biology 5, 1-9, 2004	5761	2004
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries C Jain, LM Rodriguez-R, AM Phillippy, KT Konstantinidis, S Aluru Nature communications 9 (1), 5114, 2018	3856	2018
Mash: fast genome and metagenome distance estimation using MinHash BD Ondov, TJ Treangen, P Melsted, AB Mallonee, NH Bergman, S Koren, ... Genome biology 17, 1-14, 2016	2820	2016
The complete sequence of a human genome S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... Science 376 (6588), 44-53, 2022	2581	2022
Evolution of genes and genomes on the Drosophila phylogeny AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ... Nature 450 (7167), 203-18, 2007	2289	2007
Towards complete and error-free genome assemblies of all vertebrate species A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ... Nature 592 (7856), 737-746, 2021	2097	2021
Interactive metagenomic visualization in a Web browser BD Ondov, NH Bergman, AM Phillippy BMC bioinformatics 12, 1-10, 2011	2087	2011
Nanopore sequencing and assembly of a human genome with ultra-long reads M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ... Nature biotechnology 36 (4), 338-345, 2018	2036	2018
Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies A Rhie, BP Walenz, S Koren, AM Phillippy Genome biology 21, 1-27, 2020	1983	2020
MUMmer4: A fast and versatile genome alignment system G Marçais, AL Delcher, AM Phillippy, R Coston, SL Salzberg, A Zimin PLoS computational biology 14 (1), e1005944, 2018	1802	2018
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes TJ Treangen, BD Ondov, S Koren, AM Phillippy Genome Biol 15 (11), 524, 2014	1628	2014
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ... Nature biotechnology 37 (10), 1155-1162, 2019	1554	2019
Fast algorithms for large-scale genome alignment and comparison AL Delcher, A Phillippy, J Carlton, SL Salzberg Nucleic acids research 30 (11), 2478-2483, 2002	1264	2002
Hybrid error correction and de novo assembly of single-molecule sequencing reads S Koren, MC Schatz, BP Walenz, J Martin, JT Howard, G Ganapathy, ... Nature biotechnology 30 (7), 693-700, 2012	1231	2012
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing K Berlin, S Koren, CS Chin, JP Drake, JM Landolin, AM Phillippy Nature biotechnology 33 (6), 623-630, 2015	1092	2015
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly VA Schneider, T Graves-Lindsay, K Howe, N Bouk, HC Chen, PA Kitts, ... Genome research 27 (5), 849-864, 2017	1064	2017
GAGE: A critical evaluation of genome assemblies and assembly algorithms SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ... Genome research 22 (3), 557-567, 2012	902	2012
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... Gigascience 2 (1), 2047-217X-2-10, 2013	818	2013
Integrating Hi-C links with assembly graphs for chromosome-scale assembly J Ghurye, A Rhie, BP Walenz, A Schmitt, S Selvaraj, M Pop, AM Phillippy, ... PLoS computational biology 15 (8), e1007273, 2019	769	2019

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