| Parallelization of MAFFT for large-scale multiple sequence alignments T Nakamura, KD Yamada, K Tomii, K Katoh Bioinformatics 34 (14), 2490-2492, 2018 | 849 | 2018 |
| Compound–protein interaction prediction with end-to-end learning of neural networks for graphs and sequences M Tsubaki, K Tomii, J Sese Bioinformatics 35 (2), 309-318, 2019 | 629 | 2019 |
| MitoFates: improved prediction of mitochondrial targeting sequences and their cleavage sites*[S] Y Fukasawa, J Tsuji, SC Fu, K Tomii, P Horton, K Imai Molecular & Cellular Proteomics 14 (4), 1113-1126, 2015 | 581 | 2015 |
| Analysis of amino acid indices and mutation matrices for sequence comparison and structure prediction of proteins K Tomii, M Kanehisa Protein Engineering, Design and Selection 9 (1), 27-36, 1996 | 471 | 1996 |
| Application of the MAFFT sequence alignment program to large data—reexamination of the usefulness of chained guide trees KD Yamada, K Tomii, K Katoh Bioinformatics 32 (21), 3246-3251, 2016 | 350 | 2016 |
| Molecular architecture of the active mitochondrial protein gate T Shiota, K Imai, J Qiu, VL Hewitt, K Tan, HH Shen, N Sakiyama, ... Science 349 (6255), 1544-1548, 2015 | 250 | 2015 |
| CENP‐T provides a structural platform for outer kinetochore assembly T Nishino, F Rago, T Hori, K Tomii, IM Cheeseman, T Fukagawa The EMBO journal 32 (3), 424-436, 2013 | 246 | 2013 |
| Tam41 is a CDP-diacylglycerol synthase required for cardiolipin biosynthesis in mitochondria Y Tamura, Y Harada, S Nishikawa, K Yamano, M Kamiya, T Shiota, ... Cell metabolism 17 (5), 709-718, 2013 | 191 | 2013 |
| A comparative analysis of ABC transporters in complete microbial genomes K Tomii, M Kanehisa Genome research 8 (10), 1048-1059, 1998 | 177 | 1998 |
| Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 168 | 2016 |
| Mammalian NUMT insertion is non-random J Tsuji, MC Frith, K Tomii, P Horton Nucleic acids research 40 (18), 9073-9088, 2012 | 119 | 2012 |
| Class of cyclic ribosomal peptide synthetic genes in filamentous fungi N Nagano, M Umemura, M Izumikawa, J Kawano, T Ishii, M Kikuchi, ... Fungal Genetics and Biology 86, 58-70, 2016 | 106 | 2016 |
| FORTE: a profile–profile comparison tool for protein fold recognition K Tomii, Y Akiyama Bioinformatics 20 (4), 594-595, 2004 | 100 | 2004 |
| Mitochondrial sorting and assembly machinery operates by β-barrel switching H Takeda, A Tsutsumi, T Nishizawa, C Lindau, JV Busto, LS Wenz, ... Nature 590 (7844), 163-169, 2021 | 94 | 2021 |
| Structure of the N-terminal domain of PEX1 AAA-ATPase: characterization of a putative adaptor-binding domain K Shiozawa, N Maita, K Tomii, A Seto, N Goda, Y Akiyama, T Shimizu, ... Journal of Biological Chemistry 279 (48), 50060-50068, 2004 | 92 | 2004 |
| Predicting mostly disordered proteins by using structure-unknown protein data K Shimizu, Y Muraoka, S Hirose, K Tomii, T Noguchi BMC bioinformatics 8, 1-15, 2007 | 74 | 2007 |
| Evolutionary analyses of caspase‐8 and its paralogs: deep origins of the apoptotic signaling pathways K Sakamaki, K Imai, K Tomii, DJ Miller Bioessays 37 (7), 767-776, 2015 | 73 | 2015 |
| Functional conservation of the apoptotic machinery from coral to man: the diverse and complex Bcl-2 and caspase repertoires of Acropora millepora A Moya, K Sakamaki, BM Mason, L Huisman, S Forêt, Y Weiss, TE Bull, ... BMC genomics 17, 1-20, 2016 | 68 | 2016 |
| PoSSuM: a database of similar protein–ligand binding and putative pockets JI Ito, Y Tabei, K Shimizu, K Tsuda, K Tomii Nucleic acids research 40 (D1), D541-D548, 2012 | 68 | 2012 |
| Tyrosine phosphorylation of the GARU E3 ubiquitin ligase promotes gibberellin signalling by preventing GID1 degradation K Nemoto, A Ramadan, G Arimura, K Imai, K Tomii, K Shinozaki, ... Nature Communications 8 (1), 1004, 2017 | 63 | 2017 |
