An atlas of active enhancers across human cell types and tissues R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ... Nature 507 (7493), 455-461, 2014 | 2798 | 2014 |
A promoter-level mammalian expression atlas Nature 507 (7493), 462-470, 2014 | 1803 | 2014 |
The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus) R Ming, S Hou, Y Feng, Q Yu, A Dionne-Laporte, JH Saw, P Senin, ... Nature 452 (7190), 991-996, 2008 | 1271 | 2008 |
An atlas of human long non-coding RNAs with accurate 5′ ends CC Hon, JA Ramilowski, J Harshbarger, N Bertin, OJL Rackham, J Gough, ... Nature 543 (7644), 199-204, 2017 | 1066 | 2017 |
An integrated expression atlas of miRNAs and their promoters in human and mouse D De Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Åström, ... Nature biotechnology 35 (9), 872-878, 2017 | 616 | 2017 |
Evolutionary genomics of the HAD superfamily: understanding the structural adaptations and catalytic diversity in a superfamily of phosphoesterases and allied enzymes AM Burroughs, KN Allen, D Dunaway-Mariano, L Aravind Journal of molecular biology 361 (5), 1003-1034, 2006 | 511 | 2006 |
A comprehensive survey of 3′ animal miRNA modification events and a possible role for 3′ adenylation in modulating miRNA targeting effectiveness AM Burroughs, Y Ando, MJL de Hoon, Y Tomaru, T Nishibu, R Ukekawa, ... Genome research 20 (10), 1398-1410, 2010 | 412 | 2010 |
Deep-sequencing of human Argonaute-associated small RNAs provides insight into miRNA sorting and reveals Argonaute association with RNA fragments of diverse origin AM Burroughs, Y Ando, ML de Hoon, Y Tomaru, H Suzuki, Y Hayashizaki, ... RNA biology 8 (1), 158-177, 2011 | 361 | 2011 |
Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing V Anantharaman, KS Makarova, AM Burroughs, EV Koonin, L Aravind Biology direct 8, 1-28, 2013 | 298 | 2013 |
Chromatin-associated RNA interference components contribute to transcriptional regulation in Drosophila FM Cernilogar, MC Onorati, GO Kothe, AM Burroughs, KM Parsi, ... Nature 480 (7377), 391-395, 2011 | 264* | 2011 |
Comparative genomic analyses reveal a vast, novel network of nucleotide-centric systems in biological conflicts, immunity and signaling AM Burroughs, D Zhang, DE Schäffer, LM Iyer, L Aravind Nucleic acids research 43 (22), 10633-10654, 2015 | 240 | 2015 |
The prokaryotic antecedents of the ubiquitin-signaling system and the early evolution of ubiquitin-like β-grasp domains LM Iyer, AM Burroughs, L Aravind Genome biology 7, 1-23, 2006 | 207 | 2006 |
Small but versatile: the extraordinary functional and structural diversity of the β-grasp fold AM Burroughs, S Balaji, LM Iyer, L Aravind Biology direct 2, 1-28, 2007 | 196 | 2007 |
PAPD5-mediated 3′ adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease J Boele, H Persson, JW Shin, Y Ishizu, IS Newie, R Søkilde, SM Hawkins, ... Proceedings of the National Academy of Sciences 111 (31), 11467-11472, 2014 | 187 | 2014 |
Anatomy of the E2 ligase fold: implications for enzymology and evolution of ubiquitin/Ub-like protein conjugation AM Burroughs, M Jaffee, LM Iyer, L Aravind Journal of structural biology 162 (2), 205-218, 2008 | 154 | 2008 |
Vms1 and ANKZF1 peptidyl-tRNA hydrolases release nascent chains from stalled ribosomes R Verma, KM Reichermeier, AM Burroughs, RS Oania, JM Reitsma, ... Nature 557 (7705), 446-451, 2018 | 152 | 2018 |
Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation H Morikawa, N Ohkura, A Vandenbon, M Itoh, S Nagao-Sato, H Kawaji, ... Proceedings of the National Academy of Sciences 111 (14), 5289-5294, 2014 | 150 | 2014 |
Computational identification of novel biochemical systems involved in oxidation, glycosylation and other complex modifications of bases in DNA LM Iyer, D Zhang, A Maxwell Burroughs, L Aravind Nucleic acids research 41 (16), 7635-7655, 2013 | 131 | 2013 |
Amidoligases with ATP-grasp, glutamine synthetase-like and acetyltransferase-like domains: synthesis of novel metabolites and peptide modifications of proteins LM Iyer, S Abhiman, AM Burroughs, L Aravind Molecular bioSystems 5 (12), 1636-1660, 2009 | 121 | 2009 |
Unraveling the biochemistry and provenance of pupylation: a prokaryotic analog of ubiquitination L Iyer, AM Burroughs, L Aravind Biology direct 3 (1), 45, 2008 | 120 | 2008 |