| The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases R Caspi, T Altman, R Billington, K Dreher, H Foerster, CA Fulcher, ... Nucleic acids research 42 (D1), D459-D471, 2014 | 3304 | 2014 |
| The MetaCyc database of metabolic pathways and enzymes-a 2019 update R Caspi, R Billington, IM Keseler, A Kothari, M Krummenacker, ... Nucleic acids research 48 (D1), D445-D453, 2020 | 1007 | 2020 |
| The MetaCyc database of metabolic pathways and enzymes R Caspi, R Billington, CA Fulcher, IM Keseler, A Kothari, ... Nucleic acids research 46 (D1), D633-D639, 2018 | 916 | 2018 |
| The BioCyc collection of microbial genomes and metabolic pathways PD Karp, R Billington, R Caspi, CA Fulcher, M Latendresse, A Kothari, ... Briefings in bioinformatics 20 (4), 1085-1093, 2019 | 882 | 2019 |
| EcoCyc: fusing model organism databases with systems biology IM Keseler, A Mackie, M Peralta-Gil, A Santos-Zavaleta, S Gama-Castro, ... Nucleic acids research 41 (D1), D605-D612, 2013 | 735 | 2013 |
| The EcoCyc database: reflecting new knowledge about Escherichia coli K-12 IM Keseler, A Mackie, A Santos-Zavaleta, R Billington, ... Nucleic acids research 45 (D1), D543-D550, 2017 | 686 | 2017 |
| Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology PD Karp, M Latendresse, SM Paley, M Krummenacker, QD Ong, ... Briefings in bioinformatics 17 (5), 877-890, 2016 | 303 | 2016 |
| The EcoCyc database in 2021 IM Keseler, S Gama-Castro, A Mackie, R Billington, C Bonavides-Martínez, ... Frontiers in microbiology 12, 711077, 2021 | 220 | 2021 |
| The ecocyc database PD Karp, WK Ong, S Paley, R Billington, R Caspi, C Fulcher, A Kothari, ... EcoSal Plus 8 (1), 10.1128/ecosalplus. ESP-0006-2018, 2018 | 194 | 2018 |
| Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology PD Karp, PE Midford, R Billington, A Kothari, M Krummenacker, ... Briefings in bioinformatics 22 (1), 109-126, 2021 | 179 | 2021 |
| The ecocyc database (2023) PD Karp, S Paley, R Caspi, A Kothari, M Krummenacker, PE Midford, ... EcoSal Plus 11 (1), eesp-0002-2023, 2023 | 44 | 2023 |
| Pathway tools version 24.0: Integrated software for Pathway PD Karp, SM Paley, PE Midford, M Krummenacker, R Billington, A Kothari, ... Genome Informatics and Systems Biology, 2015 | 27* | 2015 |
| Biocyc: Online resource for genome and metabolic pathway analysis R Caspi, R Billington, H Foerster, CA Fulcher, I Keseler, A Kothari, ... The FASEB Journal 30, lb192-lb192, 2016 | 24 | 2016 |
| BioCyc: a genomic and metabolic web portal with multiple omics analytical tools R Caspi, R Billington, CA Fulcher, IM Keseler, A Kothari, ... The FASEB Journal 33 (S1), 473.2-473.2, 2019 | 11 | 2019 |
| BioCyc: Microbial Genomes and Cellular Networks-The BioCyc system helps scientists navigate the greatly expanding information space of genomes and metabolic information PD Karp, IM Keseler, T Altman, R Caspi, CA Fulcher, P Subhraveti, ... Microbe 6 (4), 176, 2011 | 2 | 2011 |
| MetaCyc: a database of enzymes and pathways with a broad coverage of natural products biosynthesis R Caspi, R Billington, I Keseler, A Kothari, M Krummenacker, P Midford, ... 3rd International Conference on Natural Products Discovery and Development …, 2020 | 1 | 2020 |
| Replicon Total Genes Protein Genes RNA Genes Pseudogenes Size (bp) NCBI Link P Subhraveti, Q Ong, T Altman, R Caspi, I Keseler, PD Karp, TBC Tier change, 2013 | | 2013 |
| Searching change organism database P Subhraveti, Q Ong, I Keseler, A Kothari, R Caspi, PD Karp | | |
| This Pathway/Genome Database (PGDB) was generated by the PathoLogic program [Karp02, Dale10, Caspi12] using Pathway Tools software version 17.0 and MetaCyc version 17.0 on 10 … P Subhraveti, Q Ong, I Keseler, A Kothari, T Holland, R Caspi, PD Karp | | |