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Alex Marand
Tytuł
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Cytowane przez
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De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes
MB Hufford, AS Seetharam, MR Woodhouse, KM Chougule, S Ou, J Liu, ...
Science 373 (6555), 655-662, 2021
4602021
Widespread long-range cis-regulatory elements in the maize genome
WA Ricci, Z Lu, L Ji, AP Marand, CL Ethridge, NG Murphy, JM Noshay, ...
Nature plants 5 (12), 1237-1249, 2019
3112019
The prevalence, evolution and chromatin signatures of plant regulatory elements
Z Lu, AP Marand, WA Ricci, CL Ethridge, X Zhang, RJ Schmitz
Nature Plants 5 (12), 1250-1259, 2019
2742019
A cis-regulatory atlas in maize at single-cell resolution
AP Marand, Z Chen, A Gallavotti, RJ Schmitz
Cell 184 (11), 3041-3055. e21, 2021
2382021
Genome sequence of M6, a diploid inbred clone of the high‐glycoalkaloid‐producing tuber‐bearing potato species Solanum chacoense, reveals residual …
CP Leisner, JP Hamilton, E Crisovan, NC Manrique‐Carpintero, ...
The Plant Journal 94 (3), 562-570, 2018
1562018
Chromatin accessibility profiling methods
LM Minnoye, GK Marinov, T Krausgruber, L Pan, AP Marand, S Secchia, ...
Nature Reviews Methods Primers 1 (1), 2021
1492021
Cold stress induces enhanced chromatin accessibility and bivalent histone modifications H3K4me3 and H3K27me3 of active genes in potato
Z Zeng, W Zhang, AP Marand, B Zhu, CR Buell, J Jiang
Genome biology 20, 1-17, 2019
1412019
cis-Regulatory Elements in Plant Development, Adaptation, and Evolution
AP Marand, AL Eveland, K Kaufmann, NM Springer
Annual review of plant biology 74 (1), 111-137, 2023
1192023
Proliferation of regulatory DNA elements derived from transposable elements in the maize genome
H Zhao, W Zhang, L Chen, L Wang, AP Marand, Y Wu, J Jiang
Plant physiology 176 (4), 2789-2803, 2018
852018
Stable unmethylated DNA demarcates expressed genes and their cis-regulatory space in plant genomes
PA Crisp, AP Marand, JM Noshay, P Zhou, Z Lu, RJ Schmitz, NM Springer
Proceedings of the National Academy of Sciences 117 (38), 23991-24000, 2020
832020
Meiotic crossovers are associated with open chromatin and enriched with Stowaway transposons in potato
AP Marand, SH Jansky, H Zhao, CP Leisner, X Zhu, Z Zeng, E Crisovan, ...
Genome biology 18, 1-16, 2017
762017
PlantDHS: a database for DNase I hypersensitive sites in plants
T Zhang, AP Marand, J Jiang
Nucleic acids research 44 (D1), D1148-D1153, 2016
762016
Vision, challenges and opportunities for a Plant Cell Atlas
SG Jha, AT Borowsky, BJ Cole, N Fahlgren, A Farmer, SC Huang, P Karia, ...
Elife 10, e66877, 2021
602021
Towards genome-wide prediction and characterization of enhancers in plants
AP Marand, T Zhang, B Zhu, J Jiang
Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1860 (1), 131-139, 2017
602017
Historical meiotic crossover hotspots fueled patterns of evolutionary divergence in rice
AP Marand, H Zhao, W Zhang, Z Zeng, C Fang, J Jiang
The Plant Cell 31 (3), 645-662, 2019
512019
Identification of a novel base J binding protein complex involved in RNA polymerase II transcription termination in trypanosomes
R Kieft, Y Zhang, AP Marand, JD Moran, R Bridger, L Wells, RJ Schmitz, ...
PLoS genetics 16 (2), e1008390, 2020
442020
Assessing the regulatory potential of transposable elements using chromatin accessibility profiles of maize transposons
JM Noshay, AP Marand, SN Anderson, P Zhou, MK Mejia Guerra, Z Lu, ...
Genetics 217 (1), 1-13, 2021
38*2021
Single-cell analysis of cis-regulatory elements
AP Marand, RJ Schmitz
Current Opinion in Plant Biology 65, 102094, 2022
332022
Residual heterozygosity and epistatic interactions underlie the complex genetic architecture of yield in diploid potato
AP Marand, SH Jansky, JL Gage, AJ Hamernik, N de Leon, J Jiang
Genetics 212 (1), 317-332, 2019
252019
Quality control and evaluation of plant epigenomics data
RJ Schmitz, AP Marand, X Zhang, RA Mosher, F Turck, X Chen, MJ Axtell, ...
The Plant Cell 34 (1), 503-513, 2022
182022
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