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Jean-François Flot
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SeqPHASE: a web tool for interconverting PHASE input/output files and FASTA sequence alignments
JF Flot
Molecular Ecology Resources 10 (1), 162-166, 2010
5222010
Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga
JF Flot, B Hespeels, X Li, B Noel, I Arkhipova, EGJ Danchin, A Hejnol, ...
Nature 500 (7463), 453-457, 2013
4382013
The house spider genome reveals an ancient whole-genome duplication during arachnid evolution
EE Schwager, PP Sharma, T Clarke, DJ Leite, T Wierschin, M Pechmann, ...
BMC Biology 15, 62, 2017
3022017
Guidelines for DNA taxonomy, with a focus on the meiofauna
D Fontaneto, JF Flot, CQ Tang
Marine Biodiversity 45, 433-451, 2015
2862015
The era of reference genomes in conservation genomics
G Formenti, K Theissinger, C Fernandes, I Bista, A Bombarely, C Bleidorn, ...
Trends in ecology & evolution 37 (3), 197-202, 2022
2332022
Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes
R Blanc-Mathieu, L Perfus-Barbeoch, JM Aury, M Da Rocha, J Gouzy, ...
PLoS genetics 13 (6), e1006777, 2017
2002017
How genomics can help biodiversity conservation
K Theissinger, C Fernandes, G Formenti, I Bista, PR Berg, C Bleidorn, ...
Trends in Genetics, 2023
1852023
Metagenomic chromosome conformation capture (meta3C) unveils the diversity of chromosome organization in microorganisms
M Marbouty, A Cournac, JF Flot, H Marie-Nelly, J Mozziconacci, R Koszul
elife 3, e03318, 2014
1832014
DNAqua-Net: Developing new genetic tools for bioassessment and monitoring of aquatic ecosystems in Europe
F Leese, F Altermatt, A Bouchez, T Ekrem, D Hering, K Meissner, ...
Research Ideas and Outcomes 2, e11321, 2016
1762016
High-quality genome (re)assembly using chromosomal contact data
H Marie-Nelly, M Marbouty, A Cournac, JF Flot, G Liti, DP Parodi, S Syan, ...
Nature Communications 5, 5695, 2014
1742014
The hitchhiker's guide to single‐locus species delimitation
S Dellicour, JF Flot
Molecular Ecology Resources 18 (6), 1234-1246, 2018
1712018
Haplowebs as a graphical tool for delimiting species: a revival of Doyle's "field for recombination" approach and its application to the coral genus Pocillopora in Clipperton
JF Flot, A Couloux, S Tillier
BMC evolutionary biology 10 (1), 372, 2010
1662010
Comparative analysis of the genomes of Stylophora pistillata and Acropora digitifera provides evidence for extensive differences between species of corals
CR Voolstra, Y Li, YJ Liew, S Baumgarten, D Zoccola, J Flot, S Tambutté, ...
Scientific Reports 7 (1), 17583, 2017
1602017
Phase determination from direct sequencing of length‐variable DNA regions
JF Flot, A Tillier, S Samadi, S Tillier
Molecular Ecology Notes 6 (3), 627-630, 2006
1552006
The mitochondrial genome of Pocillopora (Cnidaria: Scleractinia) contains two variable regions: The putative D-loop and a novel ORF of unknown function
JF Flot, S Tillier
Gene 401 (1), 80-87, 2007
1482007
Patterns of genetic structure among Hawaiian corals of the genus Pocillopora yield clusters of individuals that are compatible with morphology
JF Flot, H Magalon, C Cruaud, A Couloux, S Tillier
Comptes rendus biologies 331 (3), 239-247, 2008
1452008
Champuru 1.0: a computer software for unraveling mixtures of two DNA sequences of unequal lengths
JF Flot
Molecular Ecology Notes 7 (6), 974-977, 2007
1352007
Delimiting species-poor data sets using single molecular markers: a study of barcode gaps, haplowebs and GMYC
S Dellicour, JF Flot
Systematic Biology 64 (6), 900-908, 2015
1292015
Incongruence between morphotypes and genetically delimited species in the coral genus Stylophora: phenotypic plasticity, morphological convergence …
JF Flot, J Blanchot, L Charpy, C Cruaud, WY Licuanan, Y Nakano, C Payri, ...
BMC ecology 11, 1-14, 2011
1172011
Genetic exchange among bdelloid rotifers is more likely due to horizontal gene transfer than to meiotic sex
N Debortoli, X Li, I Eyres, D Fontaneto, B Hespeels, CQ Tang, JF Flot, ...
Current Biology 26 (6), 723–732, 2016
1102016
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