| Pecoramyces ruminantium, gen. nov., sp. nov., an anaerobic gut fungus from the feces of cattle and sheep RA Hanafy, MS Elshahed, AS Liggenstoffer, GW Griffith, NH Youssef Mycologia 109 (2), 231-243, 2017 | 99 | 2017 |
| Horizontal gene transfer as an indispensable driver for evolution of Neocallimastigomycota into a distinct gut-dwelling fungal lineage CL Murphy, NH Youssef, RA Hanafy, MB Couger, JE Stajich, Y Wang, ... Applied and environmental microbiology 85 (15), e00988-19, 2019 | 84 | 2019 |
| Seven new Neocallimastigomycota genera from wild, zoo-housed, and domesticated herbivores greatly expand the taxonomic diversity of the phylum RA Hanafy, VB Lanjekar, PK Dhakephalkar, TM Callaghan, SS Dagar, ... Mycologia 112 (6), 1212-1239, 2020 | 68 | 2020 |
| Feramyces austinii, gen. nov., sp. nov., an anaerobic gut fungus from rumen and fecal samples of wild Barbary sheep and fallow deer RA Hanafy, MS Elshahed, NH Youssef Mycologia 110 (3), 513-525, 2018 | 68 | 2018 |
| A fast and reliable procedure for spore collection from anaerobic fungi: Application for RNA uptake and long-term storage of isolates S Calkins, NC Elledge, RA Hanafy, MS Elshahed, N Youssef Journal of microbiological methods 127, 206-213, 2016 | 43 | 2016 |
| Molecular dating of the emergence of anaerobic rumen fungi and the impact of laterally acquired genes Y Wang, NH Youssef, MB Couger, RA Hanafy, MS Elshahed, JE Stajich Msystems 4 (4), 10.1128/msystems. 00247-19, 2019 | 35 | 2019 |
| Assessing anaerobic gut fungal diversity in herbivores using D1/D2 large ribosomal subunit sequencing and multi‐year isolation RA Hanafy, B Johnson, NH Youssef, MS Elshahed Environmental Microbiology 22 (9), 3883-3908, 2020 | 33 | 2020 |
| Aestipascuomycesdupliciliberans gen. nov, sp. nov., the First Cultured Representative of the Uncultured SK4 Clade from Aoudad Sheep and Alpaca M Stabel, RA Hanafy, T Schweitzer, M Greif, H Aliyu, V Flad, D Young, ... Microorganisms 8 (11), 1734, 2020 | 30 | 2020 |
| Paucimyces polynucleatus gen. nov, sp. nov., a novel polycentric genus of anaerobic gut fungi from the faeces of a wild blackbuck antelope RA Hanafy, NH Youssef, MS Elshahed International Journal of Systematic and Evolutionary Microbiology 71 (6), 004832, 2021 | 23 | 2021 |
| Taxonomy of the anaerobic gut fungi (Neocallimastigomycota): a review of classification criteria and description of current taxa RA Hanafy, SS Dagar, GW Griffith, CJ Pratt, NH Youssef, MS Elshahed International journal of systematic and evolutionary microbiology 72 (7), 005322, 2022 | 22 | 2022 |
| Patterns and determinants of the global herbivorous mycobiome CH Meili, AL Jones, AX Arreola, J Habel, CJ Pratt, RA Hanafy, Y Wang, ... Nature communications 14 (1), 3798, 2023 | 19 | 2023 |
| Anaeromyces contortus, sp. nov., a new anaerobic gut fungal species (Neocallimastigomycota) isolated from the feces of cow and goat RA Hanafy, B Johnson, MS Elshahed, NH Youssef Mycologia 110 (3), 502-512, 2018 | 19 | 2018 |
| Characterization and rank assignment criteria for the anaerobic fungi (Neocallimastigomycota) MS Elshahed, RA Hanafy, Y Cheng, SS Dagar, JE Edwards, V Flad, ... International Journal of Systematic and Evolutionary Microbiology 72 (7), 005449, 2022 | 15 | 2022 |
| Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential NT Miller, D Fuller, MB Couger, M Bagazinski, P Boyne, RC Devor, ... Genomics Data 9, 154-159, 2016 | 15 | 2016 |
| Draft genome sequence of Microbacterium oleivorans strain Wellendorf implicates heterotrophic versatility and bioremediation potential AP Avramov, MB Couger, EL Hartley, C Land, R Wellendorf, RA Hanafy, ... Genomics Data 10, 54-60, 2016 | 14 | 2016 |
| Phylogenomic analysis of the RA Hanafy, Y Wang, JE Stajich, CJ Pratt, NH Youssef, MS Elshahed Neocallimastigomycota, 2023 | 12 | 2023 |
| Optimization of kojic acid production conditions from cane molasses using Plackett-Burman design ANA Zohri, GAE Mahmoud, NH Saddek, RA Hanafy European Journal of Biological Research 8 (2), 56-69, 2018 | 11 | 2018 |
| Draft genome sequence of Micrococcus luteus strain O'Kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates RA Hanafy, MB Couger, K Baker, C Murphy, SD O'Kane, C Budd, ... Genomics Data 9, 148-153, 2016 | 11 | 2016 |
| Draft genome sequence and detailed analysis of Pantoea eucrina strain Russ and implication for opportunistic pathogenesis F Moghadam, MB Couger, B Russ, R Ramsey, RA Hanafy, C Budd, ... Genomics data 10, 63-68, 2016 | 10 | 2016 |
| A Genetic Engineering Toolbox for the Lignocellulolytic Anaerobic Gut Fungus Neocallimastix frontalis CA Hooker, R Hanafy, ET Hillman, J Muñoz Briones, KV Solomon ACS synthetic biology 12 (4), 1034-1045, 2023 | 9 | 2023 |