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Andrea Di Gioacchino
Andrea Di Gioacchino
phagos
Zweryfikowany adres z phys.ens.fr - Strona główna
Tytuł
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The heterogeneous landscape and early evolution of pathogen-associated CpG dinucleotides in SARS-CoV-2
A Di Gioacchino, P Sulc, AV Komarova, BD Greenbaum, R Monasson, ...
Molecular Biology and Evolution, 2021
292021
Generative and interpretable machine learning for aptamer design and analysis of in vitro sequence selection
A Di Gioacchino, J Procyk, M Molari, JS Schreck, Y Zhou, Y Liu, ...
PLoS Computational Biology 18 (9), e1010561, 2022
272022
Perils of embedding for sampling problems
J Marshall, A Di Gioacchino, EG Rieffel
Physical Review Research 2 (2), 023020, 2020
222020
A transfer-learning approach to predict antigen immunogenicity and T-cell receptor specificity
B Bravi, A Di Gioacchino, J Fernandez-de-Cossio-Diaz, AM Walczak, ...
ELife 12, e85126, 2023
17*2023
Solution for a bipartite Euclidean traveling-salesman problem in one dimension
S Caracciolo, A Di Gioacchino, M Gherardi, EM Malatesta
Physical Review E 97 (5), 052109, 2018
152018
Repeats mimic pathogen-associated patterns across a vast evolutionary landscape
P Šulc, AD Gioacchino, A Solovyov, SA Marhon, S Sun, HT Lindholm, ...
bioRxiv, 2021.11. 04.467016, 2021
12*2021
Exact value for the average optimal cost of the bipartite traveling salesman and two-factor problems in two dimensions
R Capelli, S Caracciolo, A Di Gioacchino, EM Malatesta
Physical Review E 98 (3), 030101, 2018
122018
Selberg integrals in 1D random Euclidean optimization problems
S Caracciolo, A Di Gioacchino, EM Malatesta, LG Molinari
Journal of Statistical Mechanics: Theory and Experiment 2019 (6), 063401, 2019
112019
Retroelement decay by the exonuclease XRN1 is a viral mimicry dependency in cancer
A Hosseini, HT Lindholm, R Chen, P Mehdipour, SA Marhon, CA Ishak, ...
Cell Reports 43 (2), 2024
82024
Large deviations of the free energy in the -spin glass spherical model
M Pastore, A Di Gioacchino, P Rotondo
Physical Review Research 1 (3), 033116, 2019
82019
sgDI-tector: defective interfering viral genome bioinformatics for detection of coronavirus subgenomic RNAs
A Di Gioacchino, R Legendre, Y Rahou, V Najburg, P Charneau, ...
RNA 28 (3), 277-289, 2022
72022
Unified Fock space representation of fractional quantum Hall states
A Di Gioacchino, LG Molinari, V Erba, P Rotondo
Physical Review B 95 (24), 245123, 2017
72017
Plastic number and possible optimal solutions for an Euclidean 2-matching in one dimension
S Caracciolo, A Di Gioacchino, EM Malatesta
Journal of Statistical Mechanics: Theory and Experiment 2018 (8), 083402, 2018
62018
Cancer cells co-evolve with retrotransposons to mitigate viral mimicry
S Sun, J Hong, E You, KM Tsanov, J Chacon-Barahona, AD Gioacchino, ...
bioRxiv, 2023.05. 19.541456, 2023
52023
Designing molecular RNA switches with restricted Boltzmann machines
J Fernandez-de-Cossio-Diaz, P Hardouin, FX Lyonnet du Moutier, ...
bioRxiv, 2023.05. 10.540155, 2023
42023
Average optimal cost for the Euclidean TSP in one dimension
S Caracciolo, A Di Gioacchino, EM Malatesta, C Vanoni
Journal of Physics A: Mathematical and Theoretical 52 (26), 264003, 2019
42019
Cancer cells restrict immunogenicity of retrotransposon expression via distinct mechanisms
S Sun, E You, J Hong, D Hoyos, I Del Priore, KM Tsanov, ...
Immunity 57 (12), 2879-2894. e11, 2024
22024
Euclidean correlations in combinatorial optimization problems: a statistical physics approach
A Di Gioacchino
arXiv preprint arXiv:2001.03249, 2020
12020
Designing Molecular RNA Switches with Restricted Boltzmann Machines
S Cocco, JF de Cossío Díaz, P Hardouin, FXL du Moutier, ...
2024
Deciphering the code of viral-host adaptation through maximum entropy models
A Di Gioacchino, BD Greenbaum, R Monasson, S Cocco
bioRxiv, 2023.10. 28.564530, 2023
2023
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