Sandor Vajda

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Dima KozakovProfessor, Department of Applied Mathematics and StatisticsE-mail confirmado em stonybrook.edu
David R. HallAcpharisE-mail confirmado em acpharis.com
Adrian WhittyAssociate Professor of Chemistry, Boston UniversityE-mail confirmado em bu.edu
Ioannis Ch. PaschalidisDistinguished Professor of Engineering, Director of the Hariri Institute, Boston UniversityE-mail confirmado em bu.edu
Pirooz VakiliAssociate Professor of Systems Engineering, Boston UniversityE-mail confirmado em bu.edu
P P ValkoProfessor Emeritus of Petroleum Engineering, Texas A&M UniversityE-mail confirmado em tamu.edu
Gwo-Yu ChuangVaccine Research Center, NIAID/NIHE-mail confirmado em nih.gov
Tanggis BohnuudBasecamp ResearchE-mail confirmado em basecamp-research.com
Chi Ho NganBoston UniversityE-mail confirmado em bu.edu
HERSCHEL A. RABITZ Professor, Experimental & TheoreticalE-mail confirmado em princeton.edu
Zhiping WengProf & Chair, Department of Genomics and Computational Biology, UMASS Medical SchoolE-mail confirmado em umassmed.edu
Yang ShenAssociate Professor, ECE + CSE @ Texas A&M UniversityE-mail confirmado em tamu.edu
Karl H. ClodfelterConsultantE-mail confirmado em tessella.com
Michael SilbersteinCreative Bioinformatics, LLCE-mail confirmado em bu.edu
Ora Schueler-FurmanHebrew University, Jerusalem, IsraelE-mail confirmado em mail.huji.ac.il
Karen N. AllenChair and Professor, Department of Chemistry, Boston UniversityE-mail confirmado em bu.edu
Tamas TuranyiEötvös Loránd University BudapestE-mail confirmado em chem.elte.hu
David RitchieSenior Researcher at INRIA Nancy E-mail confirmado em inria.fr
Kim HenrickE-mail confirmado em rcsb.rutgers.edu
Michael PollastriProfessor & Senior Vice Provost for Portland - Northeastern UniversityE-mail confirmado em northeastern.edu

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Sandor Vajda

Professor of Biomedical Engineering, Boston University

E-mail confirmado em bu.edu - Página inicial

protein modeling computational biology biophysics molecular structure molecular interactions


Título Ordenar por citações Ordenar por ano Ordenar por título	Citado por Citado por	Ano
The ClusPro web server for protein–protein docking D Kozakov, DR Hall, B Xia, KA Porter, D Padhorny, C Yueh, D Beglov, ... Nature protocols 12 (2), 255-278, 2017	2834	2017
ClusPro: an automated docking and discrimination method for the prediction of protein complexes SR Comeau, DW Gatchell, S Vajda, CJ Camacho Bioinformatics 20 (1), 45-50, 2004	1085	2004
PIPER: an FFT‐based protein docking program with pairwise potentials D Kozakov, R Brenke, SR Comeau, S Vajda Proteins: Structure, Function, and Bioinformatics 65 (2), 392-406, 2006	1057	2006
ClusPro: a fully automated algorithm for protein–protein docking SR Comeau, DW Gatchell, S Vajda, CJ Camacho Nucleic acids research 32 (suppl_2), W96-W99, 2004	1011	2004
How good is automated protein docking? D Kozakov, D Beglov, T Bohnuud, SE Mottarella, B Xia, DR Hall, S Vajda Proteins: Structure, Function, and Bioinformatics 81 (12), 2159-2166, 2013	833	2013
CAPRI: a critical assessment of predicted interactions J Janin, K Henrick, J Moult, LT Eyck, MJE Sternberg, S Vajda, I Vakser, ... Proteins: Structure, Function, and Bioinformatics 52 (1), 2-9, 2003	813	2003
The FTMap family of web servers for determining and characterizing ligand-binding hot spots of proteins D Kozakov, LE Grove, DR Hall, T Bohnuud, SE Mottarella, L Luo, B Xia, ... Nature protocols 10 (5), 733-755, 2015	648	2015
New additions to the C lus P ro server motivated by CAPRI S Vajda, C Yueh, D Beglov, T Bohnuud, SE Mottarella, B Xia, DR Hall, ... Proteins: Structure, Function, and Bioinformatics 85 (3), 435-444, 2017	575	2017
Performance and its limits in rigid body protein-protein docking IT Desta, KA Porter, B Xia, D Kozakov, S Vajda Structure 28 (9), 1071-1081. e3, 2020	573	2020
Fragment-based identification of druggable ‘hot spots’ of proteins using Fourier domain correlation techniques R Brenke, D Kozakov, GY Chuang, D Beglov, D Hall, MR Landon, ... Bioinformatics 25 (5), 621-627, 2009	538	2009
Principal component analysis of kinetic models S Vajda, P Valko, T Turanyi International Journal of Chemical Kinetics 17 (1), 55-81, 1985	518	1985
Anchor residues in protein–protein interactions D Rajamani, S Thiel, S Vajda, CJ Camacho Proceedings of the National Academy of Sciences 101 (31), 11287-11292, 2004	447	2004
How proteins bind macrocycles EA Villar, D Beglov, S Chennamadhavuni, JA Porco Jr, D Kozakov, ... Nature chemical biology 10 (9), 723-731, 2014	427	2014
Similarity transformation approach to structural identifiability of nonlinear compartmental models S Vajda, KR Godfrey, H Rabitz Math. Biosci 93 (2), 217-248, 1989	311*	1989
Achieving reliability and high accuracy in automated protein docking: ClusPro, PIPER, SDU, and stability analysis in CAPRI rounds 13–19 D Kozakov, DR Hall, D Beglov, R Brenke, SR Comeau, Y Shen, K Li, ... Proteins: Structure, Function, and Bioinformatics 78 (15), 3124-3130, 2010	297	2010
FTSite: high accuracy detection of ligand binding sites on unbound protein structures CH Ngan, DR Hall, B Zerbe, LE Grove, D Kozakov, S Vajda Bioinformatics 28 (2), 286-287, 2012	292	2012
Structural conservation of druggable hot spots in protein–protein interfaces D Kozakov, DR Hall, GY Chuang, R Cencic, R Brenke, LE Grove, ... Proceedings of the National Academy of Sciences 108 (33), 13528-13533, 2011	286	2011
Convergence and combination of methods in protein–protein docking S Vajda, D Kozakov Current opinion in structural biology 19 (2), 164-170, 2009	274	2009
Accelerating and focusing protein–protein docking correlations using multi-dimensional rotational FFT generating functions DW Ritchie, D Kozakov, S Vajda Bioinformatics 24 (17), 1865-1873, 2008	259	2008
Quantifying the chameleonic properties of macrocycles and other high-molecular-weight drugs A Whitty, M Zhong, L Viarengo, D Beglov, DR Hall, S Vajda Drug Discovery Today 21 (5), 712-717, 2016	257	2016

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