| DNA barcode reference libraries for the monitoring of aquatic biota in Europe: Gap-analysis and recommendations for future work H Weigand, AJ Beermann, F Čiampor, FO Costa, Z Csabai, S Duarte, ... Science of the Total Environment 678, 499-524, 2019 | 490 | 2019 |
| Aquatic hyphomycete diversity and identity affect leaf litter decomposition in microcosms S Duarte, C Pascoal, F Cássio, F Bärlocher Oecologia 147, 658-666, 2006 | 209 | 2006 |
| DNAqua-Net: Developing new genetic tools for bioassessment and monitoring of aquatic ecosystems in Europe F Leese, F Altermatt, A Bouchez, T Ekrem, D Hering, K Meissner, ... Research Ideas and Outcomes 2, e11321, 2016 | 180 | 2016 |
| Why we need sustainable networks bridging countries, disciplines, cultures and generations for aquatic biomonitoring 2.0: a perspective derived from the DNAqua-Net COST action F Leese, A Bouchez, K Abarenkov, F Altermatt, Á Borja, K Bruce, T Ekrem, ... Advances in ecological research 58, 63-99, 2018 | 172 | 2018 |
| Copper and zinc mixtures induce shifts in microbial communities and reduce leaf litter decomposition in streams S Duarte, C Pascoal, A Alves, A Correia, F Cássio Freshwater Biology 53 (1), 91-101, 2008 | 160 | 2008 |
| Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods J Pawlowski, K Bruce, K Panksep, FI Aguirre, S Amalfitano, ... Science of The Total Environment, 151783, 2022 | 144 | 2022 |
| Effects of anthropogenic heavy metal contamination on litter decomposition in streams–a meta-analysis V Ferreira, J Koricheva, S Duarte, DK Niyogi, F Guérold Environmental Pollution 210, 261-270, 2016 | 113 | 2016 |
| Biogeography of aquatic hyphomycetes: current knowledge and future perspectives S Duarte, F Bärlocher, C Pascoal, F Cássio Fungal Ecology 19, 169-181, 2016 | 104 | 2016 |
| Assessing the dynamic of microbial communities during leaf decomposition in a low-order stream by microscopic and molecular techniques S Duarte, C Pascoal, A Alves, A Correia, F Cássio Microbiological research 165 (5), 351-362, 2010 | 101 | 2010 |
| Stream-dwelling fungal decomposer communities along a gradient of eutrophication unraveled by 454 pyrosequencing S Duarte, F Bärlocher, J Trabulo, F Cássio, C Pascoal Fungal Diversity 70, 127-148, 2015 | 93 | 2015 |
| Microbial decomposer communities are mainly structured by trophic status in circumneutral and alkaline streams S Duarte, C Pascoal, F Garabétian, F Cássio, JY Charcosset Applied and environmental microbiology 75 (19), 6211-6221, 2009 | 92 | 2009 |
| Effects of zinc on leaf decomposition by fungi in streams: studies in microcosms S Duarte, C Pascoal, F Cássio Microbial Ecology 48, 366-374, 2004 | 81 | 2004 |
| Differences in the sensitivity of fungi and bacteria to season and invertebrates affect leaf litter decomposition in a Mediterranean stream J Mora-Gómez, A Elosegi, S Duarte, F Cássio, C Pascoal, AM Romaní FEMS microbiology ecology 92 (8), fiw121, 2016 | 65 | 2016 |
| High diversity of fungi may mitigate the impact of pollution on plant litter decomposition in streams S Duarte, C Pascoal, F Cássio Microbial ecology 56, 688-695, 2008 | 63 | 2008 |
| Status and prospects of marine NIS detection and monitoring through (e)DNA metabarcoding S Duarte, PE Vieira, AS Lavrador, FO Costa Science of the Total Environment 751, 141729, 2021 | 59 | 2021 |
| Functional stability of stream‐dwelling microbial decomposers exposed to copper and zinc stress S Duarte, C Pascoal, F Cassio Freshwater Biology 54 (8), 1683-1691, 2009 | 54 | 2009 |
| Mixtures of zinc and phosphate affect leaf litter decomposition by aquatic fungi in streams I Fernandes, S Duarte, F Cássio, C Pascoal Science of the Total Environment 407 (14), 4283-4288, 2009 | 54 | 2009 |
| Microbial decomposition is highly sensitive to leaf litter emersion in a permanent temperate stream J Mora-Gómez, S Duarte, F Cássio, C Pascoal, AM Romaní Science of the Total Environment 621, 486-496, 2018 | 52 | 2018 |
| Denaturing gradient gel electrophoresis (DGGE) in microbial ecology: insights from freshwaters SAF Duarte, F Cássio, C Pascoal InTech, 2012 | 52 | 2012 |
| Effects of cadmium and phenanthrene mixtures on aquatic fungi and microbially mediated leaf litter decomposition C Moreirinha, S Duarte, C Pascoal, F Cássio Archives of Environmental Contamination and Toxicology 61, 211-219, 2011 | 50 | 2011 |
Fernanda CássioUniversity of Minho, PortugalEmail confirmado em bio.uminho.pt