Identifying significantly impacted pathways: a comprehensive review and assessment TM Nguyen, A Shafi, T Nguyen, S Draghici Genome biology 20, 1-15, 2019 | 230 | 2019 |
A novel computational approach for drug repurposing using systems biology A Peyvandipour, N Saberian, A Shafi, M Donato, S Draghici Bioinformatics, 2018 | 118 | 2018 |
A survey of the approaches for identifying differential methylation using bisulfite sequencing data A Shafi, C Mitrea, T Nguyen, S Draghici Briefings in bioinformatics 19 (5), 737-753, 2018 | 83 | 2018 |
A comprehensive survey of tools and software for active subnetwork identification H Nguyen, S Shrestha, D Tran, A Shafi, S Draghici, T Nguyen Frontiers in genetics 10, 155, 2019 | 63 | 2019 |
Identification of cell types from single cell data using stable clustering A Peyvandipour, A Shafi, N Saberian, S Draghici Scientific reports 10 (1), 12349, 2020 | 50 | 2020 |
A multi-cohort and multi-omics meta-analysis framework to identify network-based gene signatures A Shafi, T Nguyen, A Peyvandipour, H Nguyen, S Draghici Frontiers in Genetics 10, 159, 2019 | 36 | 2019 |
GSMA: an approach to identify robust global and test Gene Signatures using Meta-Analysis A Shafi, T Nguyen, A Peyvandipour, S Draghici Bioinformatics 36 (2), 487-495, 2020 | 27 | 2020 |
NBIA: a network-based integrative analysis framework–applied to pathway analysis T Nguyen, A Shafi, TM Nguyen, AG Schissler, S Draghici Scientific reports 10 (1), 4188, 2020 | 17 | 2020 |
Potential impact of pass/fail scores on USMLE Step 1: Predictors of excellence in obstetrics and gynecology residency training S Tamakuwala, J Dean, KJ Kramer, A Shafi, S Ottum, J George, S Kaur, ... Journal of Medical Education and Curricular Development 8, 23821205211037444, 2021 | 8 | 2021 |
Long-acting reversible contraception: placement, continuation, and removal rates at an inner-city Academic Medical Center Clinic A Runyan, RA Welch, KJ Kramer, S Cortez, LAJ Roberts, C Asamoah, ... Journal of Clinical Medicine 10 (9), 1918, 2021 | 7 | 2021 |
MAGPEL: an autoMated pipeline for inferring vAriant-driven Gene panEls from the full-length biomedical literature N Saberian, A Shafi, A Peyvandipour, S Draghici Scientific Reports 10 (1), 12365, 2020 | 7 | 2020 |
A systems biology approach for the identification of significantly perturbed genes A Shafi, M Donato, S Draghici Proceedings of the 6th ACM Conference on Bioinformatics, Computational …, 2015 | 6 | 2015 |
Can ACGME Milestones predict surgical specialty board passage: an example in Obstetrics and Gynecology S Ottum, C Chao, S Tamakuwala, J Dean, A Shafi, KJ Kramer, S Kaur, ... Clinical and experimental obstetrics & gynecology 48 (5), 1048, 2021 | 5 | 2021 |
Detection of KMT2A Partial Tandem Duplication in Myeloid Samples By Pacbio® Long Read Sequencing J Todd, G Hogg, K Holden, A Shafi, T Liu, K Fitzgerald, YH Cao, ... Blood 144, 1551, 2024 | | 2024 |
A program for real-time surveillance of SARS-CoV-2 genetics HN Brochu, K Song, Q Zhang, Q Zeng, A Shafi, M Robinson, J Humphrey, ... Scientific Reports 14 (1), 20249, 2024 | | 2024 |
Validation of an automated, scalable comprehensive genomic profiling assay for hematologic malignancies G Hogg, T Liu, H Cao, A Shafi, A Shabaneh, J Williams, J Howitt, ... Cancer Research 84 (6_Supplement), 4628-4628, 2024 | | 2024 |
Validation of an Automated, Scalable Comprehensive Genomic Profiling Assay for Hematologic Malignancies G Hogg, T Liu, YH Cao, A Shafi, A Shabaneh, J Howitt, A Williamson, ... Blood 142, 6003, 2023 | | 2023 |
2 Pathways to detection of non-infectious childhood uveitis in the UK: findings from the UNICORN cohort study S Kellett, H Petrushkin, J Ashworth, A Connor, E McLoone, C Schmoll, ... BMJ Open Ophthalmology 8 (Suppl 3), 2023 | | 2023 |
Development of a mutation profiling NGS assay to facilitate clinical decisions in hematologic malignancies G Hogg, T Liu, H Cao, A Shafi, A Shabaneh, J Howitt, A Williamson, ... Cancer Research 83 (7_Supplement), 6220-6220, 2023 | | 2023 |
A Systems Biology Approach To Identify Dna Methylation Based Disease Biomarkers A Shafi | | 2019 |