| Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic GJD Smith, D Vijaykrishna, J Bahl, SJ Lycett, M Worobey, OG Pybus, ... Nature 459 (7250), 1122-1125, 2009 | 2880 | 2009 |
| Establishment and cryptic transmission of Zika virus in Brazil and the Americas NR Faria, J Quick, IM Claro, J Theze, JG de Jesus, M Giovanetti, ... Nature 546 (7658), 406-410, 2017 | 661 | 2017 |
| Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK L Du Plessis, JT McCrone, AE Zarebski, V Hill, C Ruis, B Gutierrez, ... Science 371 (6530), 708-712, 2021 | 416 | 2021 |
| Vulnerabilities in coronavirus glycan shields despite extensive glycosylation Y Watanabe, ZT Berndsen, J Raghwani, GE Seabright, JD Allen, ... Nature communications 11 (1), 2688, 2020 | 382 | 2020 |
| Genomic epidemiology of SARS-CoV-2 in Guangdong province, China J Lu, L Du Plessis, Z Liu, V Hill, M Kang, H Lin, J Sun, S François, ... Cell 181 (5), 997-1003. e9, 2020 | 291 | 2020 |
| Endemic dengue associated with the co-circulation of multiple viral lineages and localized density-dependent transmission J Raghwani, A Rambaut, EC Holmes, VT Hang, TT Hien, J Farrar, B Wills, ... PLoS pathogens 7 (6), e1002064, 2011 | 127 | 2011 |
| Structure of the Lassa virus glycan shield provides a model for immunological resistance Y Watanabe, J Raghwani, JD Allen, GE Seabright, S Li, F Moser, ... Proceedings of the National Academy of Sciences 115 (28), 7320-7325, 2018 | 119 | 2018 |
| Genome-wide evolutionary dynamics of influenza B viruses on a global scale P Langat, J Raghwani, G Dudas, TA Bowden, S Edwards, A Gall, ... PLoS pathogens 13 (12), e1006749, 2017 | 106 | 2017 |
| Context-specific emergence and growth of the SARS-CoV-2 Delta variant JT McCrone, V Hill, S Bajaj, RE Pena, BC Lambert, R Inward, S Bhatt, ... Nature 610 (7930), 154-160, 2022 | 104 | 2022 |
| Phylogeography and epidemic history of hepatitis C virus genotype 4 in Africa JC Iles, J Raghwani, GLA Harrison, J Pepin, CF Djoko, U Tamoufe, ... Virology 464, 233-243, 2014 | 93 | 2014 |
| A molecular-level account of the antigenic hantaviral surface S Li, I Rissanen, A Zeltina, J Hepojoki, J Raghwani, K Harlos, OG Pybus, ... Cell reports 15 (5), 959-967, 2016 | 81 | 2016 |
| Origin and evolution of the unique hepatitis C virus circulating recombinant form 2k/1b J Raghwani, XV Thomas, SM Koekkoek, J Schinkel, R Molenkamp, ... Journal of virology 86 (4), 2212-2220, 2012 | 81 | 2012 |
| The evolution and transmission of epidemic GII. 17 noroviruses J Lu, L Fang, H Zheng, J Lao, F Yang, L Sun, J Xiao, J Lin, T Song, T Ni, ... The Journal of infectious diseases 214 (4), 556-564, 2016 | 71 | 2016 |
| Purifying selection determines the short-term time dependency of evolutionary rates in SARS-CoV-2 and pH1N1 influenza M Ghafari, L du Plessis, J Raghwani, S Bhatt, B Xu, OG Pybus, ... Molecular Biology and Evolution 39 (2), msac009, 2022 | 61 | 2022 |
| A protective monoclonal antibody targets a site of vulnerability on the surface of Rift Valley fever virus ER Allen, SA Krumm, J Raghwani, S Halldorsson, A Elliott, VA Graham, ... Cell Reports 25 (13), 3750-3758. e4, 2018 | 57 | 2018 |
| Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa NR Faria, N Vidal, J Lourenco, J Raghwani, KCE Sigaloff, AJ Tatem, ... PLoS pathogens 15 (12), e1007976, 2019 | 48 | 2019 |
| Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA. 1 JLH Tsui, JT McCrone, B Lambert, S Bajaj, RPD Inward, P Bosetti, ... Science 381 (6655), 336-343, 2023 | 44 | 2023 |
| Exceptional heterogeneity in viral evolutionary dynamics characterises chronic hepatitis C virus infection J Raghwani, R Rose, I Sheridan, P Lemey, MA Suchard, T Santantonio, ... PLoS Pathogens 12 (9), e1005894, 2016 | 41 | 2016 |
| Effect of live poultry market interventions on influenza A (H7N9) virus, Guangdong, China J Wu, J Lu, NR Faria, X Zeng, Y Song, L Zou, L Yi, L Liang, H Ni, M Kang, ... Emerging Infectious Diseases 22 (12), 2104, 2016 | 36 | 2016 |
| Role of HIV-specific CD8+ T cells in pediatric HIV cure strategies after widespread early viral escape EM Leitman, CF Thobakgale, E Adland, MA Ansari, J Raghwani, ... Journal of Experimental Medicine 214 (11), 3239-3261, 2017 | 35 | 2017 |
