| Propagation of SARS-CoV-2 in Calu-3 cells to eliminate mutations in the furin cleavage site of spike JJ Baczenas, H Andersen, S Rashid, D Yarmosh, N Puthuveetil, M Parker, ... Viruses 13 (12), 2434, 2021 | 26 | 2021 |
| The ATCC genome portal: microbial genome reference standards with data provenance B Benton, S King, SR Greenfield, N Puthuveetil, AL Reese, J Duncan, ... Microbiology Resource Announcements 10 (47), e00818-21, 2021 | 18 | 2021 |
| Development and optimization of an unbiased, metagenomics-based pathogen detection workflow for infectious disease and biosurveillance applications K Parker, H Wood, JA Russell, D Yarmosh, A Shteyman, J Bagnoli, ... Tropical Medicine and Infectious Disease 8 (2), 121, 2023 | 11 | 2023 |
| Comparative analysis and data provenance for 1,113 bacterial genome assemblies DA Yarmosh, JG Lopera, NP Puthuveetil, PF Combs, AL Reese, C Tabron, ... Msphere 7 (3), e00077-22, 2022 | 10 | 2022 |
| PanGIA: a metagenomics analytical framework for routine biosurveillance and clinical pathogen detection PE Li, JA Russell, D Yarmosh, AG Shteyman, K Parker, H Wood, ... BioRxiv, 2020.04. 20.051813, 2020 | 6 | 2020 |
| Towards increased accuracy and reproducibility in SARS-CoV-2 next generation sequence analysis for public health surveillance R Connor, DA Yarmosh, W Maier, M Shakya, R Martin, R Bradford, ... bioRxiv, 2022 | 5 | 2022 |
| The ATCC genome portal: 3,938 authenticated microbial reference genomes SV Nguyen, NP Puthuveetil, JR Petrone, JL Kirkland, K Gaffney, ... Microbiology Resource Announcements 13 (2), e01045-23, 2024 | 3 | 2024 |
| Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic Workflows R Connor, M Shakya, DA Yarmosh, W Maier, R Martin, R Bradford, ... Viruses 16 (3), 430, 2024 | 2 | 2024 |
| Vorpal: a novel RNA virus feature-extraction algorithm demonstrated through interpretable genotype-to-phenotype linear models P Davis, J Bagnoli, D Yarmosh, A Shteyman, L Presser, S Altmann, ... bioRxiv, 2020.02. 28.969782, 2020 | 2 | 2020 |
| Analytical Validation of a Sample-to-Sequence Pipeline for Non-targeted Pathogen Detection in Clinically Relevant Matrices K Parker, B Campos, H Wood, D Yarmosh, J Russell, J Aspinwall, ... Annual Meeting of the Association-for-Molecular-Pathology (AMP), 944-944, 2018 | | 2018 |
