Cole Trapnell

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	Toate	Din 2020
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Jay ShendureProfessor of Genome Sciences, University of WashingtonAdresă de e-mail confirmată pe uw.edu
Steven SalzbergBloomberg Distinguished Professor, Johns Hopkins UniversityAdresă de e-mail confirmată pe jhu.edu
Lior PachterBren Professor of Computational Biology, CaltechAdresă de e-mail confirmată pe caltech.edu
Loyal A. GoffJohns Hopkins Institute of Genetic MedicineAdresă de e-mail confirmată pe jhmi.edu
Geo PerteaData/Software Engineer, Lieber Institute for Brain DevelopmentAdresă de e-mail confirmată pe jhu.edu
Adam RobertsGoogle DeepMindAdresă de e-mail confirmată pe google.com
Mihai PopProfessor of Computer Science, University of Maryland, College ParkAdresă de e-mail confirmată pe umd.edu
Ben LangmeadAssociate Professor of Computer Science, Johns Hopkins UniversityAdresă de e-mail confirmată pe cs.jhu.edu
David R KelleyCalico LabsAdresă de e-mail confirmată pe calicolabs.com
Daehwan KimOmphalos Lifesciences IncAdresă de e-mail confirmată pe omphaloslifesci.com
Tarjei S. MikkelsenAdresă de e-mail confirmată pe alum.mit.edu
Ali MortazaviProfessor of Developmental and Cell Biology, University of California, IrvineAdresă de e-mail confirmată pe uci.edu
Bruce C. Trapnell, MDProfessor of Medicine and Pediatrics, University of CincinnatiAdresă de e-mail confirmată pe cchmc.org
Julius B. LucksProfessor, Northwestern UniversityAdresă de e-mail confirmată pe northwestern.edu
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityAdresă de e-mail confirmată pe cs.jhu.edu
Arjun RajProfessor of Bioengineering, Professor of Genetics, University of PennsylvaniaAdresă de e-mail confirmată pe seas.upenn.edu
Adam Paul ArkinDepartment of Bioengineering, University of California, Berkeley, Physical Biosciences Division, E.OAdresă de e-mail confirmată pe lbl.gov
Marcel E. DingerUniversity of SydneyAdresă de e-mail confirmată pe marceldinger.net
Manolis KellisProfessor of Computer Science, MIT and Broad InstituteAdresă de e-mail confirmată pe mit.edu
Amitabh VarshneyDean, College of Computer, Mathematical, and Natural Sciences,Professor of Computer ScienceAdresă de e-mail confirmată pe cs.umd.edu

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Cole Trapnell

Associate Professor, Dept. of Genome Sciences, University of Washington

Adresă de e-mail confirmată pe uw.edu - Pagina de pornire

single-cell genomics developmental genetics gene regulation


Titlu Sortați după descrierea bibliografică Sortați după an Sortați după titlu	Citat de Citat de	Anul
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome B Langmead, C Trapnell, M Pop, SL Salzberg Genome biology 10, 1-10, 2009	24336	2009
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation C Trapnell, BA Williams, G Pertea, A Mortazavi, G Kwan, MJ Van Baren, ... Nature biotechnology 28 (5), 511-515, 2010	15712	2010
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions D Kim, G Pertea, C Trapnell, H Pimentel, R Kelley, SL Salzberg Genome biology 14, 1-13, 2013	13643	2013
TopHat: discovering splice junctions with RNA-Seq C Trapnell, L Pachter, SL Salzberg Bioinformatics 25 (9), 1105-1111, 2009	13553	2009
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks C Trapnell, A Roberts, L Goff, G Pertea, D Kim, DR Kelley, H Pimentel, ... Nature protocols 7 (3), 562-578, 2012	13302	2012
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells C Trapnell, D Cacchiarelli, J Grimsby, P Pokharel, S Li, M Morse, ... Nature biotechnology 32 (4), 381-386, 2014	5843	2014
Differential analysis of gene regulation at transcript resolution with RNA-seq C Trapnell, DG Hendrickson, M Sauvageau, L Goff, JL Rinn, L Pachter Nature biotechnology 31 (1), 46-53, 2013	3933	2013
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses MN Cabili, C Trapnell, L Goff, M Koziol, B Tazon-Vega, A Regev, JL Rinn Genes & development 25 (18), 1915-1927, 2011	3847	2011
Reversed graph embedding resolves complex single-cell trajectories X Qiu, Q Mao, Y Tang, L Wang, R Chawla, HA Pliner, C Trapnell Nature methods 14 (10), 979-982, 2017	3657	2017
The single-cell transcriptional landscape of mammalian organogenesis J Cao, M Spielmann, X Qiu, X Huang, DM Ibrahim, AJ Hill, F Zhang, ... Nature 566 (7745), 496-502, 2019	3251	2019
Improving RNA-Seq expression estimates by correcting for fragment bias A Roberts, C Trapnell, J Donaghey, JL Rinn, L Pachter Genome biology 12, 1-14, 2011	1656	2011
Single-cell mRNA quantification and differential analysis with Census X Qiu, A Hill, J Packer, D Lin, YA Ma, C Trapnell Nature methods 14 (3), 309-315, 2017	1533	2017
Comprehensive single-cell transcriptional profiling of a multicellular organism J Cao, JS Packer, V Ramani, DA Cusanovich, C Huynh, R Daza, X Qiu, ... Science 357 (6352), 661-667, 2017	1462	2017
Computational methods for transcriptome annotation and quantification using RNA-seq M Garber, MG Grabherr, M Guttman, C Trapnell Nature methods 8 (6), 469-477, 2011	1346	2011
Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing DA Cusanovich, R Daza, A Adey, HA Pliner, L Christiansen, ... Science 348 (6237), 910-914, 2015	1300	2015
Identification of novel transcripts in annotated genomes using RNA-Seq A Roberts, H Pimentel, C Trapnell, L Pachter Bioinformatics 27 (17), 2325-2329, 2011	1248	2011
Joint profiling of chromatin accessibility and gene expression in thousands of single cells J Cao, DA Cusanovich, V Ramani, D Aghamirzaie, HA Pliner, AJ Hill, ... Science 361 (6409), 1380-1385, 2018	867	2018
Defining cell types and states with single-cell genomics C Trapnell Genome research 25 (10), 1491-1498, 2015	862	2015
A single-cell atlas of in vivo mammalian chromatin accessibility DA Cusanovich, AJ Hill, D Aghamirzaie, RM Daza, HA Pliner, JB Berletch, ... Cell 174 (5), 1309-1324. e18, 2018	757	2018
Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre E Hacisuleyman, LA Goff, C Trapnell, A Williams, J Henao-Mejia, L Sun, ... Nature structural & molecular biology 21 (2), 198-206, 2014	716	2014

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