| Environmental perception and epigenetic memory: mechanistic insight through FLC S Berry, C Dean The Plant Journal 83 (1), 133-148, 2015 | 249 | 2015 |
| Distinct phases of Polycomb silencing to hold epigenetic memory of cold in Arabidopsis H Yang, S Berry, TSG Olsson, M Hartley, M Howard, C Dean Science 357 (6356), 1142-1145, 2017 | 184 | 2017 |
| Two-particle quantum walks: Entanglement and graph isomorphism testing SD Berry, JB Wang Physical Review A—Atomic, Molecular, and Optical Physics 83 (4), 042317, 2011 | 182 | 2011 |
| Slow chromatin dynamics allow polycomb target genes to filter fluctuations in transcription factor activity S Berry, C Dean, M Howard Cell systems 4 (4), 445-457. e8, 2017 | 114 | 2017 |
| Local chromatin environment of a Polycomb target gene instructs its own epigenetic inheritance S Berry, M Hartley, TSG Olsson, C Dean, M Howard Elife 4, e07205, 2015 | 112 | 2015 |
| Quantum-walk-based search and centrality SD Berry, JB Wang Physical Review A—Atomic, Molecular, and Optical Physics 82 (4), 042333, 2010 | 94 | 2010 |
| Lipopolysaccharide O antigen size distribution is determined by a chain extension complex of variable stoichiometry in Escherichia coli O9a JD King, S Berry, BR Clarke, RJ Morris, C Whitfield Proceedings of the National Academy of Sciences 111 (17), 6407-6412, 2014 | 56 | 2014 |
| Feedback from nuclear RNA on transcription promotes robust RNA concentration homeostasis in human cells S Berry, M Müller, A Rai, L Pelkmans Cell Systems 13 (6), 454-470. e15, 2022 | 49 | 2022 |
| Disruption of an RNA-binding hinge region abolishes LHP1-mediated epigenetic repression S Berry, S Rosa, M Howard, M Bühler, C Dean Genes & development 31 (21), 2115-2120, 2017 | 45 | 2017 |
| Mechanisms of cellular mRNA transcript homeostasis S Berry, L Pelkmans Trends in Cell Biology 32 (8), 655-668, 2022 | 44 | 2022 |
| Robust and versatile arrayed libraries for human genome-wide CRISPR activation, deletion and silencing JA Yin, L Frick, MC Scheidmann, T Liu, C Trevisan, A Dhingra, A Spinelli, ... BioRxiv, 2022.05. 25.493370, 2022 | 22 | 2022 |
| Learning consistent subcellular landmarks to quantify changes in multiplexed protein maps H Spitzer, S Berry, M Donoghoe, L Pelkmans, FJ Theis Nature Methods 20 (7), 1058-1069, 2023 | 21 | 2023 |
| qwViz: Visualisation of quantum walks on graphs SD Berry, P Bourke, JB Wang Computer Physics Communications 182 (10), 2295-2302, 2011 | 14 | 2011 |
| High content genome-wide siRNA screen to investigate the coordination of cell size and RNA production M Müller, M Avar, D Heinzer, M Emmenegger, A Aguzzi, L Pelkmans, ... Scientific Data 8 (1), 162, 2021 | 10 | 2021 |
| Illustrations of mathematical modeling in biology: epigenetics, meiosis, and an outlook D Richards, S Berry, M Howard Cold Spring Harbor Symposia on Quantitative Biology 77, 175-181, 2012 | 8 | 2012 |
| Integrating analog and digital modes of gene expression at Arabidopsis FLC RL Antoniou-Kourounioti, A Meschichi, S Reeck, S Berry, G Menon, ... Elife 12, e79743, 2023 | 5 | 2023 |
| Nuclear RNA concentration coordinates RNA production with cell size in human cells S Berry, M Müller, L Pelkmans bioRxiv, 2021.05. 17.444432, 2021 | 5 | 2021 |
| Arrayed CRISPR libraries for the genome-wide activation, deletion and silencing of human protein-coding genes JA Yin, L Frick, MC Scheidmann, T Liu, C Trevisan, A Dhingra, A Spinelli, ... Nature Biomedical Engineering 9 (1), 127-148, 2025 | 3 | 2025 |
| Global control of RNA polymerase II A Gillis, S Berry Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms, 195024, 2024 | 3 | 2024 |
| CRL3ARMC5 ubiquitin ligase and Integrator phosphatase form parallel mechanisms to control early stages of RNA Pol II transcription R Cacioppo, A Gillis, I Shlamovitz, A Zeller, D Castiblanco, A Crisp, ... Molecular Cell 84 (24), 4808-4823. e13, 2024 | 1 | 2024 |
