| Basic local alignment search tool SF Altschul, W Gish, W Miller, EW Myers, DJ Lipman Journal of molecular biology 215 (3), 403-410, 1990 | 193197* | 1990 |
| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 17574 | 2012 |
| Initial sequencing and comparative analysis of the mouse genome European Bioinformatics Institute: Birney Ewan 3 Goldman Nick 3 Kasprzyk ... Nature 420 (6915), 520-562, 2002 | 8717 | 2002 |
| A greedy algorithm for aligning DNA sequences Z Zhang, S Schwartz, L Wagner, W Miller Journal of Computational biology 7 (1-2), 203-214, 2000 | 6508 | 2000 |
| Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ... nature 447 (7146), 799-816, 2007 | 6122 | 2007 |
| Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes A Siepel, G Bejerano, JS Pedersen, AS Hinrichs, M Hou, K Rosenbloom, ... Genome research 15 (8), 1034-1050, 2005 | 4980 | 2005 |
| Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution Project management: Fulton Lucinda A. 1 Mardis Elaine R. 1 Wilson Richard K. 1 Nature 432 (7018), 695-716, 2004 | 2967 | 2004 |
| Galaxy: a platform for interactive large-scale genome analysis B Giardine, C Riemer, RC Hardison, R Burhans, L Elnitski, P Shah, ... Genome research 15 (10), 1451-1455, 2005 | 2655 | 2005 |
| Genome sequence of the Brown Norway rat yields insights into mammalian evolution University of Utah Weiss Robert B. 14 Dunn Diane M. 14, ... Nature 428 (6982), 493-521, 2004 | 2567 | 2004 |
| The ENCODE (ENCyclopedia of DNA elements) project EA Feingold, PJ Good, MS Guyer, S Kamholz, L Liefer, K Wetterstrand, ... Science 306 (5696), 636-640, 2004 | 2456 | 2004 |
| Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 M McClelland, KE Sanderson, J Spieth, SW Clifton, P Latreille, L Courtney, ... Nature 413 (6858), 852-856, 2001 | 2353 | 2001 |
| Optimal alignments in linear space EW Myers, W Miller Bioinformatics 4 (1), 11-17, 1988 | 2247 | 1988 |
| Aligning multiple genomic sequences with the threaded blockset aligner M Blanchette, WJ Kent, C Riemer, L Elnitski, AFA Smit, KM Roskin, ... Genome research 14 (4), 708-715, 2004 | 2231 | 2004 |
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| Basic local alignment search tool SF Altschull, W Gish, W Miller, EW Myers, DJ Lipman Journal of molecular biology 215 (3), 403-410, 1990 | 1793 | 1990 |
| Evolutionary and biomedical insights from the rhesus macaque genome RA Gibbs, J Rogers, MG Katze, R Bumgarner, GM Weinstock, ER Mardis, ... science 316 (5822), 222-234, 2007 | 1578 | 2007 |
| A user's guide to the encyclopedia of DNA elements (ENCODE) ENCODE Project Consortium PLoS biology 9 (4), e1001046, 2011 | 1499 | 2011 |
| Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes WJ Kent, R Baertsch, A Hinrichs, W Miller, D Haussler Proceedings of the National Academy of Sciences 100 (20), 11484-11489, 2003 | 1483 | 2003 |
| PipMaker—a web server for aligning two genomic DNA sequences S Schwartz, Z Zhang, KA Frazer, A Smit, C Riemer, J Bouck, R Gibbs, ... Genome research 10 (4), 577-586, 2000 | 1429 | 2000 |
| A time-efficient, linear-space local similarity algorithm X Huang, W Miller Advances in applied mathematics 12 (3), 337-357, 1991 | 1316 | 1991 |
