| The cell tracking challenge: 10 years of objective benchmarking M Maška, V Ulman, P Delgado-Rodriguez, E Gómez-de-Mariscal, ... Nature Methods 20 (7), 1010-1020, 2023 | 116 | 2023 |
| Cell segmentation and tracking using CNN-based distance predictions and a graph-based matching strategy T Scherr, K Löffler, M Böhland, R Mikut PLoS One 15 (12), e0243219, 2020 | 94 | 2020 |
| Pax6 organizes the anterior eye segment by guiding two distinct neural crest waves M Takamiya, J Stegmaier, AY Kobitski, B Schott, BD Weger, D Margariti, ... PLoS genetics 16 (6), e1008774, 2020 | 41 | 2020 |
| A graph-based cell tracking algorithm with few manually tunable parameters and automated segmentation error correction K Löffler, T Scherr, R Mikut PloS one 16 (9), e0249257, 2021 | 40 | 2021 |
| CoNIC Challenge: Pushing the frontiers of nuclear detection, segmentation, classification and counting S Graham, QD Vu, M Jahanifar, M Weigert, U Schmidt, W Zhang, J Zhang, ... Medical image analysis 92, 103047, 2024 | 32 | 2024 |
| Biomedical image analysis competitions: The state of current participation practice M Eisenmann, A Reinke, V Weru, MD Tizabi, F Isensee, TJ Adler, ... arXiv preprint arXiv:2212.08568, 2022 | 32 | 2022 |
| Machine learning methods for automated classification of tumors with papillary thyroid carcinoma-like nuclei: A quantitative analysis M Böhland, L Tharun, T Scherr, R Mikut, V Hagenmeyer, LDR Thompson, ... Plos one 16 (9), e0257635, 2021 | 30 | 2021 |
| Automated annotator variability inspection for biomedical image segmentation MP Schilling, T Scherr, FR Münke, O Neumann, M Schutera, R Mikut, ... IEEE access 10, 2753-2765, 2022 | 20 | 2022 |
| Influence of synthetic label image object properties on GAN supported segmentation pipelines M Böhland, T Scherr, A Bartschat, R Mikut, M Reischl Proceedings 29th Workshop Computational Intelligence, 289-305, 2019 | 17 | 2019 |
| microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation T Scherr, J Seiffarth, B Wollenhaupt, O Neumann, MP Schilling, ... Plos one 17 (11), e0277601, 2022 | 15* | 2022 |
| On improving an already competitive segmentation algorithm for the cell tracking challenge-lessons learned T Scherr, K Löffler, O Neumann, R Mikut bioRxiv, 2021.06. 26.450019, 2021 | 15 | 2021 |
| Best Practices in Deep Learning-Based Segmentation of Microscopy Images T Scherr, A Bartschat, M Reischl, J Stegmaier, R Mikut Proceedings 28. Workshop Computational Intelligence, 175-195, 2018 | 14 | 2018 |
| ObiWan-Microbi: OMERO-based integrated workflow for annotating microbes in the cloud J Seiffarth, T Scherr, B Wollenhaupt, O Neumann, H Scharr, D Kohlheyer, ... SoftwareX 26, 101638, 2024 | 13 | 2024 |
| Ciscnet-a single-branch cell nucleus instance segmentation and classification network M Böhland, O Neumann, MP Schilling, M Reischl, R Mikut, K Löffler, ... 2022 IEEE International Symposium on Biomedical Imaging Challenges (ISBIC), 1-5, 2022 | 11* | 2022 |
| BeadNet: deep learning-based bead detection and counting in low-resolution microscopy images T Scherr, K Streule, A Bartschat, M Böhland, J Stegmaier, M Reischl, ... Bioinformatics 36 (17), 4668-4670, 2020 | 9 | 2020 |
| Gradient-Based Surface Reconstruction and the Application to Wind Waves T Scherr Ruprecht-Karls-University Heidelberg, Institute for Environmental Physics, 2017 | 8 | 2017 |
| Data for-Tracking one in a million: Performance of automated tracking on a large-scale microbial data set J Seiffarth, L Blöbaum, K Löffler, T Scherr, A Grünberger, H Scharr, ... Zenodo, 2022 | 6 | 2022 |
| KIT-Sch-GE (2) K Löffler, T Scherr, R Mikut Cell Tracking Challenge algorithm description, 2021 | 5 | 2021 |
| Digitale Bildverarbeitung und Tiefe Neuronale Netze in der Augenheilkunde–aktuelle Trends A Bartschat, S Allgeier, S Bohn, T Scherr, D Blessing, KM Reichert, ... Klinische Monatsblätter für Augenheilkunde 236 (12), 1399-1406, 2019 | 5* | 2019 |
| Impact of annotation noise on histopathology nucleus segmentation MP Schilling, N Ahuja, L Rettenberger, T Scherr, M Reischl Current Directions in Biomedical Engineering 8 (2), 197-200, 2022 | 4 | 2022 |
Ralf MikutKarlsruhe Institute of Technology (Germany)Adresă de e-mail confirmată pe kit.edu
