Andrew L Ferguson

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	Toate	Din 2020
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Kirill ShmilovichGenentechAdresă de e-mail confirmată pe gene.com
Rachael (Ré) MansbachAssistant Professor of Physics, Concordia UniversityAdresă de e-mail confirmată pe concordia.ca
John D. TovarJohns Hopkins Chemistry and Materials ScienceAdresă de e-mail confirmată pe jhu.edu
Hythem SidkyNational Center for Advancing Translational Sciences, NIHAdresă de e-mail confirmată pe nih.gov
Gerard C. L. WongUCLA BioE Dept, Chem & Biochem Dept., Microbiology, Immunology, & Mol Genetics Dept, CNSIAdresă de e-mail confirmată pe seas.ucla.edu
Jianjun ChengChair Professor of Materials Science and Engineering, Westlake UniversityAdresă de e-mail confirmată pe westlake.edu.cn
Athanassios Z PanagiotopoulosSusan Dod Brown Professor of Chemical and Biological Engineering, Princeton Univ.Adresă de e-mail confirmată pe princeton.edu
Wei Chen (陈伟)University of Illinois, Urbana-ChampaignAdresă de e-mail confirmată pe illinois.edu
Ernest Y. LeeUCSF DermatologyAdresă de e-mail confirmată pe ucla.edu
Andrew W. Long, PhDSolventum, Data Science and Cloud InfrastructureAdresă de e-mail confirmată pe solventum.com
Pablo DebenedettiProfessor of Chemical and Biological Engineering, Princeton UniversityAdresă de e-mail confirmată pe princeton.edu
Ziyuan SongSoochow UniversityAdresă de e-mail confirmată pe suda.edu.cn
Bryce ThurstonPostdoctoral Appointee, Center for Integrated Nanotechnologies, Sandia National LaboratoriesAdresă de e-mail confirmată pe sandia.gov
John P BartonAssociate Professor, Department of Computational and Systems Biology, University of PittsburghAdresă de e-mail confirmată pe pitt.edu
Gregory R. HartResearch Scientist, Institute for Disease Modeling, Bill and Melinda Gates FoundationAdresă de e-mail confirmată pe idmod.org
Jiang Wang (王江)Guizhou Institute of Technology

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Andrew L Ferguson

Associate Professor of Molecular Engineering, University of Chicago

Adresă de e-mail confirmată pe uchicago.edu - Pagina de pornire

molecular simulation dimensionality reduction machine learning computational immunology statistical mechanics


Titlu Sortați după descrierea bibliografică Sortați după an Sortați după titlu	Citat de Citat de	Anul
The value of antimicrobial peptides in the age of resistance M Magana, M Pushpanathan, AL Santos, L Leanse, M Fernandez, ... The lancet infectious diseases 20 (9), e216-e230, 2020	941	2020
Promoting transparency and reproducibility in enhanced molecular simulations Nature methods 16 (8), 670-673, 2019	825	2019
Investigating the optimal size of anticancer nanomedicine L Tang, X Yang, Q Yin, K Cai, H Wang, I Chaudhury, C Yao, Q Zhou, ... Proceedings of the National Academy of Sciences 111 (43), 15344-15349, 2014	671	2014
Translating HIV sequences into quantitative fitness landscapes predicts viral vulnerabilities for rational immunogen design AL Ferguson, JK Mann, S Omarjee, T Ndung’u, BD Walker, ... Immunity 38 (3), 606-617, 2013	263	2013
Molecular enhanced sampling with autoencoders: On‐the‐fly collective variable discovery and accelerated free energy landscape exploration W Chen, AL Ferguson Journal of computational chemistry 39 (25), 2079-2102, 2018	226	2018
Helical antimicrobial polypeptides with radial amphiphilicity M Xiong, MW Lee, RA Mansbach, Z Song, Y Bao, RM Peek Jr, C Yao, ... Proceedings of the National Academy of Sciences 112 (43), 13155-13160, 2015	210	2015
Machine learning and data science in soft materials engineering AL Ferguson Journal of Physics: Condensed Matter 30 (4), 043002, 2017	204	2017
Mapping membrane activity in undiscovered peptide sequence space using machine learning EY Lee, BM Fulan, GCL Wong, AL Ferguson Proceedings of the National Academy of Sciences 113 (48), 13588-13593, 2016	191	2016
Machine learning force fields and coarse-grained variables in molecular dynamics: application to materials and biological systems P Gkeka, G Stoltz, A Barati Farimani, Z Belkacemi, M Ceriotti, JD Chodera, ... Journal of chemical theory and computation 16 (8), 4757-4775, 2020	189	2020
Solubility and Molecular Conformations of n-Alkane Chains in Water AL Ferguson, PG Debenedetti, AZ Panagiotopoulos The Journal of Physical Chemistry B 113 (18), 6405-6414, 2009	180	2009
Nonlinear dimensionality reduction in molecular simulation: The diffusion map approach AL Ferguson, AZ Panagiotopoulos, IG Kevrekidis, PG Debenedetti Chemical Physics Letters 509 (1), 1-11, 2011	179	2011
Systematic determination of order parameters for chain dynamics using diffusion maps AL Ferguson, AZ Panagiotopoulos, PG Debenedetti, IG Kevrekidis Proceedings of the National Academy of Sciences 107 (31), 13597-13602, 2010	179	2010
The Fitness Landscape of HIV-1 Gag: Advanced Modeling Approaches and Validation of Model Predictions by In Vitro Testing JK Mann, JP Barton, AL Ferguson, S Omarjee, BD Walker, A Chakraborty, ... PLoS computational biology 10 (8), e1003776, 2014	172	2014
Nonlinear discovery of slow molecular modes using state-free reversible VAMPnets W Chen, H Sidky, AL Ferguson The Journal of chemical physics 150 (21), 2019	145	2019
Machine learning for collective variable discovery and enhanced sampling in biomolecular simulation H Sidky, W Chen, AL Ferguson Molecular Physics 118 (5), e1737742, 2020	136	2020
Collective variable discovery and enhanced sampling using autoencoders: Innovations in network architecture and error function design W Chen, AR Tan, AL Ferguson The Journal of chemical physics 149 (7), 2018	136	2018
What can machine learning do for antimicrobial peptides, and what can antimicrobial peptides do for machine learning? EY Lee, MW Lee, BM Fulan, AL Ferguson, GCL Wong Interface focus 7 (6), 20160153, 2017	135	2017
Enzyme-like click catalysis by a copper-containing single-chain nanoparticle J Chen, J Wang, Y Bai, K Li, ES Garcia, AL Ferguson, SC Zimmerman Journal of the American Chemical Society 140 (42), 13695-13702, 2018	127	2018
Synthesis of polypeptides via bioinspired polymerization of in situ purified N-carboxyanhydrides Z Song, H Fu, J Wang, J Hui, T Xue, LA Pacheco, H Yan, R Baumgartner, ... Proceedings of the National Academy of Sciences 116 (22), 10658-10663, 2019	123	2019
Machine learning for autonomous crystal structure identification WF Reinhart, AW Long, MP Howard, AL Ferguson, AZ Panagiotopoulos Soft Matter 13 (27), 4733-4745, 2017	113	2017

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