James Yurkovich

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	Toate	Din 2020
Referințe bibliografice	4038	3575
h-index	26	25
i10-index	40	38

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Laurence YangQueen's UniversityAdresă de e-mail confirmată pe queensu.ca
Nathan D. PriceProfessor, Buck Institute for Research on AgingAdresă de e-mail confirmată pe buckinstitute.org
Jonathan MonkUC San DiegoAdresă de e-mail confirmată pe ucsd.edu
Leroy HoodInstitute for Systems BiologyAdresă de e-mail confirmată pe systemsbiology.org
Nathan MihAdresă de e-mail confirmată pe eng.ucsd.edu
Donghyuk KimAssociate Professor, School of Energy and Chemical Engineering, UNISTAdresă de e-mail confirmată pe unist.ac.kr
Olafur E. SigurjonssonReykjavik UniversityAdresă de e-mail confirmată pe ru.is
Andreas DrägerProfessor for Data Analytics and BioinformaticsAdresă de e-mail confirmată pe informatik.uni-halle.de
Óttar RolfssonAssistant Professor of Biochemistry and Systems Biology, University of IcelandAdresă de e-mail confirmată pe hi.is
Justin TanScientist at Mojia BiotechAdresă de e-mail confirmată pe mojiabio.com
Noa RappaportResearch Associate Professor, Buck Institute for Research on Aging, Principal Scientist, ISBAdresă de e-mail confirmată pe systemsbiology.org
Zachary A. KingAdresă de e-mail confirmată pe ucsd.edu
David HeckmannAdresă de e-mail confirmată pe hhu.de
Daniel C. ZielinskiProject Scientist, University of California San DiegoAdresă de e-mail confirmată pe ucsd.edu
Erol KavvasData ScientistAdresă de e-mail confirmată pe ucdavis.edu
Ke ChenUniversity of California, San DiegoAdresă de e-mail confirmată pe eng.ucsd.edu
Anand SastryBioinformatician at Vir BioAdresă de e-mail confirmată pe vir.bio
Xin FangBristol-Myers SquibbAdresă de e-mail confirmată pe bms.com
Sang Woo SeoAssociate Professor of School of Chemical and Biological Engineering, Seoul National UniversityAdresă de e-mail confirmată pe snu.ac.kr
Adam FeistUC San Diego (UCSD) / Technical University of Denmark (DTU)Adresă de e-mail confirmată pe ucsd.edu

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James Yurkovich

Research Assistant Professor, Buck Institute for Research on Aging

Adresă de e-mail confirmată pe buckinstitute.org

Systems Biology


Titlu Sortați după descrierea bibliografică Sortați după an Sortați după titlu	Citat de Citat de	Anul
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0 L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ... Nature protocols 14 (3), 639-702, 2019	1202	2019
Gut microbiome pattern reflects healthy ageing and predicts survival in humans T Wilmanski, C Diener, N Rappaport, S Patwardhan, J Wiedrick, ... Nature metabolism 3 (2), 274-286, 2021	505	2021
BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree CJ Norsigian, N Pusarla, JL McConn, JT Yurkovich, A Dräger, BO Palsson, ... Nucleic acids research 48 (D1), D402-D406, 2020	247	2020
Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance ES Kavvas, E Catoiu, N Mih, JT Yurkovich, Y Seif, N Dillon, D Heckmann, ... Nature communications 9 (1), 4306, 2018	196	2018
Metabolic network analysis reveals altered bile acid synthesis and metabolism in Alzheimer’s disease P Baloni, CC Funk, J Yan, JT Yurkovich, A Kueider-Paisley, K Nho, ... Cell Reports Medicine 1 (8), 2020	174	2020
Elucidating dynamic metabolic physiology through network integration of quantitative time-course metabolomics A Bordbar, JT Yurkovich, G Paglia, O Rolfsson, ÓE Sigurjónsson, ... Scientific reports 7 (1), 46249, 2017	146	2017
Genome-scale metabolic reconstructions of multiple Salmonella strains reveal serovar-specific metabolic traits Y Seif, E Kavvas, JC Lachance, JT Yurkovich, SP Nuccio, X Fang, ... Nature communications 9 (1), 3771, 2018	131	2018
Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activities X Fang, A Sastry, N Mih, D Kim, J Tan, JT Yurkovich, CJ Lloyd, Y Gao, ... Proceedings of the National Academy of Sciences 114 (38), 10286-10291, 2017	122	2017
Cellular responses to reactive oxygen species are predicted from molecular mechanisms L Yang, N Mih, A Anand, JH Park, J Tan, JT Yurkovich, JM Monk, CJ Lloyd, ... Proceedings of the National Academy of Sciences 116 (28), 14368-14373, 2019	111	2019
Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655 Y Gao, JT Yurkovich, SW Seo, I Kabimoldayev, A Dräger, K Chen, ... Nucleic Acids Research, gky752, 2018	107	2018
Quantitative time-course metabolomics in human red blood cells reveal the temperature dependence of human metabolic networks JT Yurkovich, DC Zielinski, L Yang, G Paglia, O Rolfsson, ... Journal of Biological Chemistry 292 (48), 19556-19564, 2017	66	2017
Toward community standards and software for whole-cell modeling D Waltemath, JR Karr, FT Bergmann, V Chelliah, M Hucka, M Krantz, ... IEEE Transactions on Biomedical Engineering 63 (10), 2007-2014, 2016	63	2016
A systems approach to clinical oncology uses deep phenotyping to deliver personalized care JT Yurkovich, Q Tian, ND Price, L Hood Nature Reviews Clinical Oncology 17 (3), 183-194, 2020	61	2020
Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions ES Kavvas, Y Seif, JT Yurkovich, C Norsigian, S Poudel, WW Greenwald, ... BMC systems biology 12, 1-15, 2018	61	2018
Modeling the multi-scale mechanisms of macromolecular resource allocation L Yang, JT Yurkovich, ZA King, BO Palsson Current opinion in microbiology 45, 8-15, 2018	55	2018
Community standards to facilitate development and address challenges in metabolic modeling MA Carey, A Dräger, ME Beber, JA Papin, JT Yurkovich Molecular Systems Biology 16 (8), e9235, 2020	51	2020
Characterizing posttranslational modifications in prokaryotic metabolism using a multiscale workflow E Brunk, RL Chang, J Xia, H Hefzi, JT Yurkovich, D Kim, E Buckmiller, ... Proceedings of the National Academy of Sciences 115 (43), 11096-11101, 2018	51	2018
Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data L Yang, J Tan, EJ O’Brien, JM Monk, D Kim, HJ Li, P Charusanti, ... Proceedings of the National Academy of Sciences 112 (34), 10810-10815, 2015	47	2015
Principles of proteome allocation are revealed using proteomic data and genome-scale models L Yang, JT Yurkovich, CJ Lloyd, A Ebrahim, MA Saunders, BO Palsson Scientific reports 6 (1), 36734, 2016	46	2016
Temperature-dependent estimation of Gibbs energies using an updated group-contribution method B Du, Z Zhang, S Grubner, JT Yurkovich, BO Palsson, DC Zielinski Biophysical journal 114 (11), 2691-2702, 2018	45	2018

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