The SARS-CoV-2 nucleocapsid protein is dynamic, disordered, and phase separates with RNA J Cubuk, JJ Alston, JJ Incicco, S Singh, MD Stuchell-Brereton, MD Ward, ... Nature communications 12 (1), 1936, 2021 | 561 | 2021 |
Assessing implicit models for nonpolar mean solvation forces: the importance of dispersion and volume terms JA Wagoner, NA Baker Proceedings of the National Academy of Sciences 103 (22), 8331-8336, 2006 | 363 | 2006 |
Solvation forces on biomolecular structures: a comparison of explicit solvent and Poisson–Boltzmann models J Wagoner, NA Baker Journal of computational chemistry 25 (13), 1623-1629, 2004 | 135 | 2004 |
Perspective: Maximum caliber is a general variational principle for dynamical systems PD Dixit, J Wagoner, C Weistuch, S Pressé, K Ghosh, KA Dill The Journal of chemical physics 148 (1), 2018 | 94 | 2018 |
Molecular motors: Power strokes outperform Brownian ratchets JA Wagoner, KA Dill The Journal of Physical Chemistry B 120 (26), 6327-6336, 2016 | 74 | 2016 |
Optimizing the Poisson dielectric boundary with explicit solvent forces and energies: lessons learned with atom-centered dielectric functions JMJ Swanson, JA Wagoner, NA Baker, JA McCammon Journal of Chemical Theory and Computation 3 (1), 170-183, 2007 | 57 | 2007 |
Mechanisms for achieving high speed and efficiency in biomolecular machines JA Wagoner, KA Dill Proceedings of the National Academy of Sciences 116 (13), 5902-5907, 2019 | 45 | 2019 |
A smoothly decoupled particle interface: new methods for coupling explicit and implicit solvent JA Wagoner, VS Pande The Journal of chemical physics 134 (21), 2011 | 24 | 2011 |
Assessing the performance of implicit solvation models at a nucleic acid surface F Dong, JA Wagoner, NA Baker Physical Chemistry Chemical Physics 10 (32), 4889-4902, 2008 | 23 | 2008 |
Reducing the effect of Metropolization on mixing times in molecular dynamics simulations JA Wagoner, VS Pande The Journal of chemical physics 137 (21), 2012 | 21 | 2012 |
Evolution of mechanical cooperativity among myosin II motors JA Wagoner, KA Dill Proceedings of the National Academy of Sciences 118 (20), e2101871118, 2021 | 20 | 2021 |
Opposing pressures of speed and efficiency guide the evolution of molecular machines JA Wagoner, KA Dill Molecular biology and evolution 36 (12), 2813-2822, 2019 | 18 | 2019 |
Finite domain simulations with adaptive boundaries: Accurate potentials and nonequilibrium movesets JA Wagoner, VS Pande The Journal of Chemical Physics 139 (23), 2013 | 18 | 2013 |
Communication: adaptive boundaries in multiscale simulations JA Wagoner, VS Pande The Journal of Chemical Physics 148 (14), 2018 | 10 | 2018 |
A Catch Bond Suppresses Fluctuations in the Coordinated Actions of Myosin II Motors JA Wagoner Biophysical Journal 118 (3), 119a, 2020 | | 2020 |
Evolutionary Tradeoffs in Efficiency and Turnover Rate for F0F1-ATPase JA Wagoner, K Dill Biophysical Journal 114 (3), 519a, 2018 | | 2018 |
Molecular Motors have Evolved to Optimize Thermodynamic Performance JA Wagoner, K Dill Biophysical Journal 112 (3), 279a, 2017 | | 2017 |
Combining Physics and Knowledge in Blind Protein Structure Prediction E Brini, J Morrone, J Wagoner, J MacCallum, K Dill Biophysical Journal 110 (3), 345a, 2016 | | 2016 |
The Nonequilibrium Statistical Thermodynamics of Biological Cycles JA Wagoner, K Dill Biophysical Journal 110 (3), 349a-350a, 2016 | | 2016 |
Adaptive Boundaries in Multi-Resolution Simulations JA Wagoner, K Dill, V Pande Biophysical Journal 108 (2), 182a, 2015 | | 2015 |