Aedin Culhane

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John QuackenbushHarvard T.H. Chan School of Public Health, Channing Division of Network Medicine, and Dana-FarberAdresă de e-mail confirmată pe hsph.harvard.edu
Benjamin Haibe-KainsScientist (Principal Investigator), Princess Margaret Cancer Centre, University Health NetworkAdresă de e-mail confirmată pe uhnresearch.ca
des higginsUniversity College DublinAdresă de e-mail confirmată pe ucd.ie
Professor William M. GallagherUCD Conway Institute, University College DublinAdresă de e-mail confirmată pe ucd.ie
Levi WaldronCity University of New York Graduate School of Public Health and Health PolicyAdresă de e-mail confirmată pe sph.cuny.edu
Matthew SchwedeHematologistAdresă de e-mail confirmată pe swedish.org
Darran O'ConnorRoyal College of Surgeons in IrelandAdresă de e-mail confirmată pe rcsi.ie
Michael BirrerProfessor Medicine HMSAdresă de e-mail confirmată pe partners.org
Chen MengBavarian Center for Biomolecular Mass Spectrometry (BayBioMS), TUM School of Life SciencesAdresă de e-mail confirmată pe tum.de
Amin Moghaddas GholamiTechnische Universität München, Chair for Proteomics and BioanalyticsAdresă de e-mail confirmată pe tum.de
Donal J BrennanUniversity College DublinAdresă de e-mail confirmată pe ucd.ie
Michael J DuffySt Vincent's University Hospital and University College DublinAdresă de e-mail confirmată pe ucd.ie
Markus S. SchröderETH ZürichAdresă de e-mail confirmată pe biol.ethz.ch
Daniel GusenleitnerBayer LLCAdresă de e-mail confirmată pe bayer.com
Ronny Drapkin, MD, PhDUniversity of Pennsylvania, Perelman School of MedicineAdresă de e-mail confirmată pe pennmedicine.upenn.edu
Giovanni ParmigianiProfessor Department of Data Science, DFCIAdresă de e-mail confirmată pe dfci.harvard.edu
Bernhard KusterTechnical University of MunichAdresă de e-mail confirmată pe tum.de
Markus RiesterNovartis Institutes for Biomedical ResearchAdresă de e-mail confirmată pe novartis.com
Ian B. JefferyAdresă de e-mail confirmată pe 4dpharmaplc.com
Eleanor A HoweDiamond Age Data ScienceAdresă de e-mail confirmată pe diamondagedatascience.com

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Aedin Culhane

University of Limerick School of Medicine

Adresă de e-mail confirmată pe ul.ie - Pagina de pornire

Bioinformatics tumor immunology Multiomics single cell matrix factorization


Titlu Sortați după descrierea bibliografică Sortați după an Sortați după titlu	Citat de Citat de	Anul
The immune landscape of cancer V Thorsson, DL Gibbs, SD Brown, D Wolf, DS Bortone, THO Yang, ... Immunity 48 (4), 812-830. e14, 2018	5027	2018
Apoptosis: molecular regulation of cell death AJ Hale, CA Smith, LC Sutherland, VEA Stoneman, VL Longthorne, ... European Journal of Biochemistry 236 (1), 1-26, 1996	997	1996
RAP80 targets BRCA1 to specific ubiquitin structures at DNA damage sites B Sobhian, G Shao, DR Lilli, AC Culhane, LA Moreau, B Xia, ... Science 316 (5828), 1198-1202, 2007	819	2007
Repeatability of published microarray gene expression analyses JPA Ioannidis, DB Allison, CA Ball, I Coulibaly, X Cui, AC Culhane, ... Nature genetics 41 (2), 149-155, 2009	673	2009
Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data IB Jeffery, DG Higgins, AC Culhane BMC bioinformatics 7, 1-16, 2006	522	2006
survcomp: an R/Bioconductor package for performance assessment and comparison of survival models MS Schröder, AC Culhane, J Quackenbush, B Haibe-Kains Bioinformatics 27 (22), 3206-3208, 2011	450	2011
Dimension reduction techniques for the integrative analysis of multi-omics data C Meng, OA Zeleznik, GG Thallinger, B Kuster, AM Gholami, AC Culhane Briefings in bioinformatics 17 (4), 628-641, 2016	441	2016
MADE4: an R package for multivariate analysis of gene expression data AC Culhane, J Thioulouse, G Perrière, DG Higgins Bioinformatics 21 (11), 2789-2790, 2005	418	2005
A three-gene model to robustly identify breast cancer molecular subtypes B Haibe-Kains, C Desmedt, S Loi, AC Culhane, G Bontempi, ... Journal of the National Cancer Institute 104 (4), 311-325, 2012	387	2012
A multivariate approach to the integration of multi-omics datasets C Meng, B Kuster, AC Culhane, AM Gholami BMC bioinformatics 15, 1-13, 2014	348	2014
Reporting guidelines for human microbiome research: the STORMS checklist C Mirzayi, A Renson, Genomic Standards Consortium, ... Nature medicine 27 (11), 1885-1892, 2021	287	2021
Between-group analysis of microarray data AC Culhane, G Perriere, EC Considine, TG Cotter, DG Higgins Bioinformatics 18 (12), 1600-1608, 2002	280	2002
Enter the matrix: factorization uncovers knowledge from omics GL Stein-O’Brien, R Arora, AC Culhane, AV Favorov, LX Garmire, ... Trends in Genetics 34 (10), 790-805, 2018	248	2018
Analysis of differential gene expression in colorectal cancer and stroma using fluorescence-activated cell sorting purification MJ Smith, AC Culhane, M Donovan, JC Coffey, BD Barry, MA Kelly, ... British journal of cancer 100 (9), 1452-1464, 2009	238	2009
Taxonomy of breast cancer based on normal cell phenotype predicts outcome S Santagata, A Thakkar, A Ergonul, B Wang, T Woo, R Hu, JC Harrell, ... The Journal of clinical investigation 124 (2), 859-870, 2014	236	2014
Risk prediction for late-stage ovarian cancer by meta-analysis of 1525 patient samples M Riester, W Wei, L Waldron, AC Culhane, L Trippa, E Oliva, S Kim, ... Journal of the National Cancer Institute 106 (5), dju048, 2014	229	2014
An embryonic diapause-like adaptation with suppressed Myc activity enables tumor treatment persistence E Dhimolea, R de Matos Simoes, D Kansara, A Al’Khafaji, J Bouyssou, ... Cancer cell 39 (2), 240-256. e11, 2021	216	2021
Cross-platform comparison and visualisation of gene expression data using co-inertia analysis AC Culhane, G Perrière, DG Higgins BMC bioinformatics 4, 1-15, 2003	202	2003
Gene Expression Atlas update—a value-added database of microarray and sequencing-based functional genomics experiments M Kapushesky, T Adamusiak, T Burdett, A Culhane, A Farne, A Filippov, ... Nucleic acids research 40 (D1), D1077-D1081, 2012	187	2012
Proliferative genes dominate malignancy-risk gene signature in histologically-normal breast tissue DT Chen, A Nasir, A Culhane, C Venkataramu, W Fulp, R Rubio, T Wang, ... Breast cancer research and treatment 119, 335-346, 2010	187	2010

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