Articole cu mandate pentru acces public - Padraig GleesonAflați mai multe
Disponibile undeva: 39
NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail
P Gleeson, S Crook, RC Cannon, ML Hines, GO Billings, M Farinella, ...
PLoS Comput Biol 6 (6), e1000815, 2010
Mandate: US National Institutes of Health
OpenWorm: an open-science approach to modelling Caenorhabditis elegans
B Szigeti, P Gleeson, M Vella, S Khayrulin, A Palyanov, J Hokanson, ...
Name: Frontiers in Computational Neuroscience 8, 137, 2014
Mandate: UK Biotechnology and Biological Sciences Research Council, UK Engineering …
The neocortical microcircuit collaboration portal: a resource for rat somatosensory cortex
S Ramaswamy, JD Courcol, M Abdellah, SR Adaszewski, N Antille, ...
Frontiers in Neural Circuits 9, 44, 2015
Mandate: Wellcome Trust, Government of Spain
NetPyNE: a tool for data-driven multiscale modeling of brain circuits
S Dura-Bernal, B Suter, P Gleeson, M Cantarelli, A Quintana, F Rodriguez, ...
bioRxiv, 461137, 2018
Mandate: US National Science Foundation, US National Institutes of Health, Australian …
OpenWorm: overview and recent advances in integrative biological simulation of Caenorhabditis elegans
GP Sarma, CW Lee, T Portegys, V Ghayoomie, T Jacobs, B Alicea, ...
Philosophical Transactions of the Royal Society B: Biological Sciences 373 …, 2018
Mandate: US National Institutes of Health, Wellcome Trust
Toward standard practices for sharing computer code and programs in neuroscience
SJ Eglen, B Marwick, YO Halchenko, M Hanke, S Sufi, P Gleeson, ...
Nature Neuroscience 20 (6), 770-773, 2017
Mandate: US National Institutes of Health, Wellcome Trust
LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2
RC Cannon, P Gleeson, S Crook, G Ganapathy, B Marin, E Piasini, ...
Frontiers in Neuroinformatics 8, 2014
Mandate: US National Institutes of Health, Wellcome Trust, European Commission
Open Source Brain: a collaborative resource for visualizing, analyzing, simulating and developing standardized models of neurons and circuits
P Gleeson, M Cantarelli, B Marin, A Quintana, M Earnshaw, E Piasini, ...
bioRxiv, 229484, 2018
Mandate: US National Science Foundation, US National Institutes of Health, UK …
A Commitment to Open Source in Neuroscience
P Gleeson, AP Davison, RA Silver, GA Ascoli
Neuron 96 (5), 964-965, 2017
Mandate: US National Institutes of Health, Wellcome Trust
Harmonizing semantic annotations for computational models in biology
ML Neal, M König, D Nickerson, G Mısırlı, R Kalbasi, A Dräger, K Atalag, ...
Briefings in bioinformatics 20 (2), 540-550, 2019
Mandate: US National Science Foundation, US National Institutes of Health …
c302: a multiscale framework for modelling the nervous system of Caenorhabditis elegans
P Gleeson, D Lung, R Grosu, R Hasani, SD Larson
Philosophical Transactions of the Royal Society B: Biological Sciences 373 …, 2018
Mandate: Wellcome Trust
The SONATA Data Format for Efficient Description of Large-Scale Network Models
K Dai, J Hernando, YN Billeh, SL Gratiy, J Planas, AP Davison, ...
bioRxiv, 625491, 2019
Mandate: US Department of Energy, US National Institutes of Health, Wellcome Trust …
Code generation in computational neuroscience: a review of tools and techniques
I Blundell, R Brette, TA Cleland, TG Close, D Coca, AP Davison, ...
Frontiers in Neuroinformatics 12, 68, 2018
Mandate: US National Institutes of Health, Helmholtz Association, UK Biotechnology …
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)
D Waltemath, M Golebiewski, ML Blinov, P Gleeson, H Hermjakob, ...
Journal of integrative bioinformatics 17 (2-3), 20200005, 2020
Mandate: US National Science Foundation, US National Institutes of Health, German …
Glutamate-bound NMDARs arising from in vivo-like network activity extend spatio-temporal integration in a L5 cortical pyramidal cell model
M Farinella, DT Ruedt, P Gleeson, F Lanore, RA Silver
PLOS Comput Biol 10 (4), e1003590, 2014
Mandate: Wellcome Trust, European Commission
libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience
M Vella, RC Cannon, S Crook, AP Davison, G Ganapathy, HPC Robinson, ...
Frontiers in neuroinformatics 8, 2014
Mandate: US National Institutes of Health, UK Medical Research Council, Wellcome …
Geppetto: a reusable modular open platform for exploring neuroscience data and models
M Cantarelli, B Marin, A Quintana, M Earnshaw, R Court, P Gleeson, ...
Philosophical Transactions of the Royal Society B: Biological Sciences 373 …, 2018
Mandate: US National Science Foundation, US National Institutes of Health, UK …
BioSimulators: a central registry of simulation engines and services for recommending specific tools
B Shaikh, LP Smith, D Vasilescu, G Marupilla, M Wilson, E Agmon, ...
Nucleic acids research 50 (W1), W108-W114, 2022
Mandate: US National Institutes of Health
The past, present, and future of the brain imaging data structure (BIDS)
RA Poldrack, CJ Markiewicz, S Appelhoff, YK Ashar, T Auer, S Baillet, ...
Imaging Neuroscience 2, 1-19, 2024
Mandate: US National Science Foundation, US National Institutes of Health, German …
The importance of standards for sharing of computational models and data
RA Poldrack, F Feingold, MJ Frank, P Gleeson, G de Hollander, ...
Computational Brain & Behavior 2 (3-4), 229-232, 2019
Mandate: US National Institutes of Health, German Research Foundation, European …
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