| A general and flexible method for signal extraction from single-cell RNA-seq data D Risso, F Perraudeau, S Gribkova, S Dudoit, JP Vert Nature communications 9 (1), 284, 2018 | 696 | 2018 |
| Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications K Van den Berge, F Perraudeau, C Soneson, MI Love, D Risso, JP Vert, ... Genome biology 19, 1-17, 2018 | 228 | 2018 |
| Improvements to postprandial glucose control in subjects with type 2 diabetes: a multicenter, double blind, randomized placebo-controlled trial of a novel probiotic formulation F Perraudeau, P McMurdie, J Bullard, A Cheng, C Cutcliffe, A Deo, J Eid, ... BMJ Open Diabetes Research and Care 8 (1), e001319, 2020 | 137 | 2020 |
| Identification of Allorecognition Loci in Neurospora crassa by Genomics and Evolutionary Approaches J Zhao, P Gladieux, E Hutchison, J Bueche, C Hall, F Perraudeau, ... Molecular biology and evolution 32 (9), 2417-2432, 2015 | 60 | 2015 |
| Genomic sequencing reveals historical, demographic and selective factors associated with the diversification of the fire‐associated fungus Neurospora discreta P Gladieux, BA Wilson, F Perraudeau, LA Montoya, D Kowbel, ... Molecular ecology 24 (22), 5657-5675, 2015 | 39 | 2015 |
| Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference F Perraudeau, D Risso, K Street, E Purdom, S Dudoit F1000Research 6, 1158, 2017 | 25 | 2017 |
| Publisher Correction: A general and flexible method for signal extraction from single-cell RNA-seq data D Risso, F Perraudeau, S Gribkova, S Dudoit, JP Vert Nature communications 10, 646, 2019 | 19 | 2019 |
| A general and flexible method for signal extraction from single-cell RNA-seq data. Nat Commun. 2018; 9 (1): 284 D Risso, F Perraudeau, S Gribkova, S Dudoit, JP Vert | 17 | |
| CALDERA: finding all significant de Bruijn subgraphs for bacterial GWAS H Roux de Bézieux, L Lima, F Perraudeau, A Mary, S Dudoit, L Jacob Bioinformatics 38 (Supplement_1), i36-i44, 2022 | 13 | 2022 |
| A general and flexible method for signal extraction from single-cell RNA-seq data. Nat Commun. 2018; 9 (1) D Risso, F Perraudeau, S Gribkova, S Dudoit, JP Vert | 13 | |
| Improvements to postprandial glucose control in subjects with type 2 diabetes: a multicenter, double blind, randomized placebo-controlled trial of a novel probiotic formulation … F Perraudeau, P McMurdie, J Bullard, A Cheng, C Cutcliffe, A Deo, J Eid, ... DOI: https://doi. org/10.1136/bmjdrc-2020-001319, 0 | 13 | |
| Methods and compositions for determining metabolic maps C Cutcliffe, JS Eid, JH Bullard, T Altman, F Perraudeau US Patent App. 15/945,705, 2018 | 12 | 2018 |
| ZINB-WaVE: A general and flexible method for signal extraction from single-cell RNA-seq data. bioRxiv D Risso, F Perraudeau, S Gribkova, S Dudoit, JP Vert Published online November 2 (2017), 10.1101, 2017 | 11* | 2017 |
| ZINB-WaVE: a general and flexible method for signal extraction from single-cell RNA-seq data. bioRxiv 125112 D Risso, F Perraudeau, S Gribkova, S Dudoit, JP Vert | 6 | 2017 |
| Medical food assessment using a smartphone app with continuous glucose monitoring sensors: proof-of-concept study H Roux de Bézieux, J Bullard, O Kolterman, M Souza, F Perraudeau JMIR Formative Research 5 (3), e20175, 2021 | 5 | 2021 |
| Accurate Determination of Bacterial Abundances in Human Metagenomes Using Full-length 16S Sequencing Reads F Perraudeau, S Dudoit, JH Bullard bioRxiv, 228619, 2017 | 3 | 2017 |
| Methods And Compositions For Treating Liver Disorders O Kolterman, F Perraudeau, J Bullard, J Eid, C Cutcliffe US Patent App. 17/610,398, 2022 | 2 | 2022 |
| Microbial compositions and methods of use JS Eid, C Cutcliffe, O Kolterman, F Perraudeau, J Bullard, P Mcmurdie, ... US Patent App. 17/210,078, 2021 | 2 | 2021 |
| FiberGrowth Pipeline: A Framework Toward Predicting Fiber-Specific Growth From Human Gut Bacteroidetes Genomes B Colnet, CMK Sieber, F Perraudeau, M Leclerc Frontiers in Microbiology 12, 632567, 2021 | 1 | 2021 |
| 758-P: Medical Food (MF) with Butyrate Producing (BP)+ Mucin Regulating (MR) Microbes Improves Glucose Control (GC) in T2D OG Kolterman, F Perraudeau, MS Iyer, JS Eid, J Bullard, ... Diabetes 68 (Supplement_1), 2019 | | 2019 |
Sandrine DudoitDivision of Biostatistics and Department of Statistics, University of California, BerkeleyAdresă de e-mail confirmată pe stat.berkeley.edu
