| Transcriptome and genome sequencing uncovers functional variation in humans. DET Lappalainen T, Sammeth M, Friedländer MR, 't Hoen Nature, 2013 | 2125 | 2013 |
| Passive and active DNA methylation and the interplay with genetic variation in gene regulation M Gutierrez-Arcelus, T Lappalainen, SB Montgomery, A Buil, H Ongen, ... elife 2, e00523, 2013 | 522 | 2013 |
| Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription H Kilpinen, SM Waszak, AR Gschwind, SK Raghav, RM Witwicki, A Orioli, ... Science 342 (6159), 744-747, 2013 | 407 | 2013 |
| Effect of predicted protein-truncating genetic variants on the human transcriptome MA Rivas, M Pirinen, DF Conrad, M Lek, EK Tsang, KJ Karczewski, ... Science 348 (6235), 666-669, 2015 | 365 | 2015 |
| Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories PAC 't Hoen, MR Friedländer, J Almlöf, M Sammeth, I Pulyakhina, ... Nature biotechnology 31 (11), 1015-1022, 2013 | 277 | 2013 |
| Population variation and genetic control of modular chromatin architecture in humans SM Waszak, O Delaneau, AR Gschwind, H Kilpinen, SK Raghav, ... Cell 162 (5), 1039-1050, 2015 | 243 | 2015 |
| Tissue-specific effects of genetic and epigenetic variation on gene regulation and splicing M Gutierrez-Arcelus, H Ongen, T Lappalainen, SB Montgomery, A Buil, ... PLoS genetics 11 (1), e1004958, 2015 | 241 | 2015 |
| Topoisomerase 1 prevents replication stress at R-loop-enriched transcription termination sites A Promonet, I Padioleau, Y Liu, L Sanz, A Biernacka, AL Schmitz, ... Nature communications 11 (1), 3940, 2020 | 164 | 2020 |
| Putative cis-regulatory drivers in colorectal cancer H Ongen, CL Andersen, JB Bramsen, B Oster, MH Rasmussen, ... Nature 512 (7512), 87-90, 2014 | 159 | 2014 |
| Biased allelic expression in human primary fibroblast single cells C Borel, PG Ferreira, F Santoni, O Delaneau, A Fort, KY Popadin, ... The American Journal of Human Genetics 96 (1), 70-80, 2015 | 139 | 2015 |
| The histone deacetylases sir2 and rpd3 act on ribosomal DNA to control the replication program in budding yeast K Yoshida, J Bacal, D Desmarais, I Padioleau, O Tsaponina, A Chabes, ... Molecular cell 54 (4), 691-697, 2014 | 125 | 2014 |
| easyRNASeq: a bioconductor package for processing RNA-Seq data N Delhomme, I Padioleau, EE Furlong, LM Steinmetz Bioinformatics, 2012 | 118 | 2012 |
| RAS mutations drive proliferative chronic myelomonocytic leukemia via a KMT2A-PLK1 axis RM Carr, D Vorobyev, T Lasho, DL Marks, EJ Tolosa, A Vedder, ... Nature communications 12 (1), 2901, 2021 | 84 | 2021 |
| MRX increases chromatin accessibility at stalled replication forks to promote nascent DNA resection and cohesin loading A Delamarre, A Barthe, C de la Roche Saint-André, P Luciano, R Forey, ... Molecular cell 77 (2), 395-410. e3, 2020 | 71 | 2020 |
| Comprehensive human virus screening using high-throughput sequencing with a user-friendly representation of bioinformatics analysis: a pilot study TJ Petty, S Cordey, I Padioleau, M Docquier, L Turin, O Preynat-Seauve, ... Journal of clinical microbiology 52 (9), 3351-3361, 2014 | 69 | 2014 |
| Celiac disease T-cell epitopes from gamma-gliadins: immunoreactivity depends on the genome of origin, transcript frequency, and flanking protein variation EMJ Salentijn, DC Mitea, SV Goryunova, IIM Van der Meer, I Padioleau, ... BMC genomics 13 (1), 277, 2012 | 69 | 2012 |
| Mec1 is activated at the onset of normal S phase by low-dNTP pools impeding DNA replication R Forey, A Poveda, S Sharma, A Barthe, I Padioleau, C Renard, ... Molecular cell 78 (3), 396-410. e4, 2020 | 64 | 2020 |
| Comprehensive metagenomic analysis of glioblastoma reveals absence of known virus despite antiviral‐like type I interferon gene response É Cosset, TJ Petty, V Dutoit, S Cordey, I Padioleau, P Otten‐Hernandez, ... International journal of cancer 135 (6), 1381-1389, 2014 | 48 | 2014 |
| Integrative pan-cancer genomic and transcriptomic analyses of refractory metastatic cancer Y Pradat, J Viot, AA Yurchenko, K Gunbin, L Cerbone, M Deloger, ... Cancer discovery 13 (5), 1116-1143, 2023 | 30 | 2023 |
| Genomic mutation landscape of skin cancers from DNA repair-deficient xeroderma pigmentosum patients AA Yurchenko, F Rajabi, T Braz-Petta, H Fassihi, A Lehmann, C Nishigori, ... Nature Communications 14 (1), 2561, 2023 | 28 | 2023 |