BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ... PLoS computational biology 15 (4), e1006650, 2019 | 3564 | 2019 |
Yersinia pestis and the Plague of Justinian 541–543 AD: a genomic analysis DM Wagner, J Klunk, M Harbeck, A Devault, N Waglechner, JW Sahl, ... The Lancet infectious diseases 14 (4), 319-326, 2014 | 596 | 2014 |
A random effects branch-site model for detecting episodic diversifying selection SL Kosakovsky Pond, B Murrell, M Fourment, SDW Frost, W Delport, ... Molecular biology and evolution 28 (11), 3033-3043, 2011 | 476 | 2011 |
Genome-scale rates of evolutionary change in bacteria S Duchêne, KE Holt, FX Weill, S Le Hello, J Hawkey, DJ Edwards, ... Microbial genomics 2 (11), e000094, 2016 | 283 | 2016 |
PATRISTIC: a program for calculating patristic distances and graphically comparing the components of genetic change M Fourment, MJ Gibbs BMC evolutionary biology 6, 1-5, 2006 | 258 | 2006 |
A comparison of common programming languages used in bioinformatics M Fourment, MR Gillings BMC bioinformatics 9, 1-9, 2008 | 245 | 2008 |
The contrasting phylodynamics of human influenza B viruses D Vijaykrishna, EC Holmes, U Joseph, M Fourment, YCF Su, R Halpin, ... elife 4, e05055, 2015 | 229 | 2015 |
Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus KI Bos, A Herbig, J Sahl, N Waglechner, M Fourment, SA Forrest, J Klunk, ... Elife 5, e12994, 2016 | 203 | 2016 |
African apes as reservoirs of Plasmodium falciparum and the origin and diversification of the Laverania subgenus L Duval, M Fourment, E Nerrienet, D Rousset, SA Sadeuh, SM Goodman, ... Proceedings of the National Academy of Sciences 107 (23), 10561-10566, 2010 | 184 | 2010 |
Influenza A virus migration and persistence in North American wild birds J Bahl, S Krauss, D Kühnert, M Fourment, G Raven, SP Pryor, LJ Niles, ... PLoS pathogens 9 (8), e1003570, 2013 | 117 | 2013 |
Antigenic and molecular characterization of avian influenza A (H9N2) viruses, Bangladesh K Shanmuganatham, MM Feeroz, L Jones-Engel, GJD Smith, M Fourment, ... Emerging infectious diseases 19 (9), 1393, 2013 | 99 | 2013 |
Genetic evolution of the neuraminidase of influenza A (H3N2) viruses from 1968 to 2009 and its correspondence to haemagglutinin evolution KB Westgeest, M de Graaf, M Fourment, TM Bestebroer, R van Beek, ... Journal of general virology 93 (9), 1996-2007, 2012 | 91 | 2012 |
Accumulating variation at conserved sites in potyvirus genomes is driven by species discovery and affects degenerate primer design L Zheng, PJ Wayper, AJ Gibbs, M Fourment, BC Rodoni, MJ Gibbs PLoS One 3 (2), e1586, 2008 | 85 | 2008 |
Chimpanzee Malaria Parasites Related to Plasmodium ovale in Africa L Duval, E Nerrienet, D Rousset, SA Sadeuh Mba, S Houze, M Fourment, ... PLoS One 4 (5), e5520, 2009 | 84 | 2009 |
Inconsistencies in estimating the age of HIV-1 subtypes due to heterotachy JO Wertheim, M Fourment, SL Kosakovsky Pond Molecular biology and evolution 29 (2), 451-456, 2012 | 73 | 2012 |
The impact of migratory flyways on the spread of avian influenza virus in North America M Fourment, AE Darling, EC Holmes BMC evolutionary biology 17, 1-12, 2017 | 70 | 2017 |
Seqotron: a user-friendly sequence editor for Mac OS X M Fourment, EC Holmes BMC research notes 9, 1-4, 2016 | 55 | 2016 |
19 dubious ways to compute the marginal likelihood of a phylogenetic tree topology M Fourment, AF Magee, C Whidden, A Bilge, FA Matsen IV, VN Minin Systematic biology 69 (2), 209-220, 2020 | 49 | 2020 |
The recent establishment of North American H10 lineage influenza viruses in Australian wild waterfowl and the evolution of Australian avian influenza viruses D Vijaykrishna, YM Deng, YCF Su, M Fourment, P Iannello, GG Arzey, ... Journal of virology 87 (18), 10182-10189, 2013 | 48 | 2013 |
Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposals M Fourment, BC Claywell, V Dinh, C McCoy, FA Matsen IV, AE Darling Systematic biology 67 (3), 490-502, 2018 | 38 | 2018 |