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Juan Manuel Vanegas
Juan Manuel Vanegas
Associate Professor of Biochemistry and Biophysics, Oregon State University
Adresă de e-mail confirmată pe oregonstate.edu - Pagina de pornire
Titlu
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AFM for structure and dynamics of biomembranes
EI Goksu, JM Vanegas, CD Blanchette, WC Lin, ML Longo
Biochimica et Biophysica Acta (BBA)-Biomembranes 1788 (1), 254-266, 2009
2492009
Importance of force decomposition for local stress calculations in biomembrane molecular simulations
JM Vanegas, A Torres-Sánchez, M Arroyo
Journal of chemical theory and computation 10 (2), 691-702, 2014
1892014
Role of unsaturated lipid and ergosterol in ethanol tolerance of model yeast biomembranes
JM Vanegas, MF Contreras, R Faller, ML Longo
Biophysical journal 102 (3), 507-516, 2012
1542012
Ultra-thin enzymatic liquid membrane for CO2 separation and capture
Y Fu, YB Jiang, D Dunphy, H Xiong, E Coker, SS Chou, H Zhang, ...
Nature communications 9 (1), 990, 2018
1102018
Examining the mechanical equilibrium of microscopic stresses in molecular simulations
A Torres-Sánchez, JM Vanegas, M Arroyo
Physical Review Letters 114, 258102, 2015
1082015
Mechanism of Catalysis by l-Asparaginase
J Lubkowski, J Vanegas, WK Chan, PL Lorenzi, JN Weinstein, ...
Biochemistry 59 (20), 1927-1945, 2020
572020
Geometric derivation of the microscopic stress: A covariant central force decomposition
A Torres-Sánchez, JM Vanegas, M Arroyo
Journal of the Mechanics and Physics of Solids 93, 224-239, 2016
482016
Influence of ethanol on lipid/sterol membranes: phase diagram construction from AFM imaging
JM Vanegas, R Faller, ML Longo
Langmuir 26 (13), 10415-10418, 2010
472010
Hydration mimicry by membrane ion channels
MI Chaudhari, JM Vanegas, LR Pratt, A Muralidharan, SB Rempe
Annual review of physical chemistry 71 (1), 461-484, 2020
452020
Force Transduction and Lipid Binding in MscL: A Continuum-Molecular Approach
JM Vanegas, M Arroyo
PLoS One 9 (12), e113947, 2014
432014
Catalytic role of the substrate defines specificity of therapeutic L-asparaginase
A Anishkin, JM Vanegas, DM Rogers, PL Lorenzi, WK Chan, P Purwaha, ...
Journal of molecular biology 427 (17), 2867-2885, 2015
342015
Probing key elements of teixobactin–lipid II interactions in membranes
PC Wen, JM Vanegas, SB Rempe, E Tajkhorshid
Chemical Science 9 (34), 6997-7008, 2018
312018
Crystalline, ordered and disordered lipid membranes: convergence of stress profiles due to ergosterol
JM Vanegas, ML Longo, R Faller
Journal of the American Chemical Society 133 (11), 3720-3723, 2011
242011
Mechanical activation of MscL revealed by a locally distributed tension molecular dynamics approach
R Rajeshwar T., A Anishkin, S Sukharev, JM Vanegas
Biophysical Journal 120 (2), 232-242, 2021
232021
Insertion of dengue E into lipid bilayers studied by neutron reflectivity and molecular dynamics simulations
JM Vanegas, F Heinrich, DM Rogers, BD Carson, S La Bauve, BC Vernon, ...
Biochimica et Biophysica Acta (BBA)-Biomembranes 1860, 1216-1230, 2018
152018
Two-dimensional Bose-Hubbard model for helium on graphene
J Yu, E Lauricella, M Elsayed, K Shepherd Jr, NS Nichols, T Lombardi, ...
Physical Review B 103 (23), 235414, 2021
132021
Combined molecular/continuum modeling reveals the role of friction during fast unfolding of coiled-coil proteins
A Torres-Sánchez, JM Vanegas, PK Purohit, M Arroyo
Soft matter 15 (24), 4961-4975, 2019
132019
Membrane mediated mechanical stimuli produces distinct active-like states in the AT1 receptor
B Poudel, R Rajeshwar T, JM Vanegas
Nature communications 14 (1), 4690, 2023
112023
The dysferlin C2A domain binds PI (4, 5) P2 and penetrates membranes
E Kwok, SC Otto, P Khuu, AP Carpenter, SJ Codding, PN Reardon, ...
Journal of molecular biology 435 (17), 168193, 2023
92023
Effect of local stress on accurate modeling of bacterial outer membranes using all-atom molecular dynamics
E Pirhadi, JM Vanegas, M Farin, JW Schertzer, X Yong
Journal of chemical theory and computation 19 (1), 363-372, 2022
82022
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