| Improved metagenome binning and assembly using deep variational autoencoders JN Nissen, J Johansen, RL Allesøe, CK Sønderby, JJA Armenteros, ... Nature biotechnology 39 (5), 555-560, 2021 | 393 | 2021 |
| Machine learning and deep learning applications in microbiome research R Hernández Medina, S Kutuzova, KN Nielsen, J Johansen, LH Hansen, ... ISME communications 2 (1), 98, 2022 | 148 | 2022 |
| Genome binning of viral entities from bulk metagenomics data J Johansen, DR Plichta, JN Nissen, ML Jespersen, SA Shah, L Deng, ... Nature communications 13 (1), 965, 2022 | 82 | 2022 |
| The ubiquitin ligase RFWD3 is required for translesion DNA synthesis I Gallina, IA Hendriks, S Hoffmann, NB Larsen, J Johansen, ... Molecular Cell 81 (3), 442-458. e9, 2021 | 69 | 2021 |
| Discovery of drug–omics associations in type 2 diabetes with generative deep-learning models RL Allesøe, AT Lundgaard, R Hernández Medina, A Aguayo-Orozco, ... Nature biotechnology 41 (3), 399-408, 2023 | 58 | 2023 |
| Pharmacogenomics of GLP-1 receptor agonists: a genome-wide analysis of observational data and large randomised controlled trials AY Dawed, A Mari, A Brown, TJ McDonald, L Li, S Wang, MG Hong, ... The Lancet Diabetes & Endocrinology 11 (1), 33-41, 2023 | 56 | 2023 |
| Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan J Johansen, K Atarashi, Y Arai, N Hirose, SJ Sørensen, T Vatanen, M Knip, ... Nature microbiology 8 (6), 1064-1078, 2023 | 48 | 2023 |
| The CD4+ T cell response to a commensal-derived epitope transitions from a tolerant to an inflammatory state in Crohn’s disease TK Pedersen, EM Brown, DR Plichta, J Johansen, SW Twardus, ... Immunity 55 (10), 1909-1923. e6, 2022 | 41 | 2022 |
| WAM-Foam, asphalt production at lower operating temperatures BG Koenders, DA Stoker, C Robertus, O Larsen, J Johansen Ninth International Conference on Asphalt PavementsInternational Society for …, 2002 | 40 | 2002 |
| A comparison of emissions from hot mixture and warm asphalt mixture production PC De Groot, C Bowen, BG Koenders, DA Stoker, O Larsen, J Johansen Proc. of the International Road Federation, Part B. International Road …, 2001 | 36 | 2001 |
| Genetic studies of abdominal MRI data identify genes regulating hepcidin as major determinants of liver iron concentration HR Wilman, CA Parisinos, N Atabaki-Pasdar, M Kelly, EL Thomas, ... Journal of Hepatology 71 (3), 594-602, 2019 | 33 | 2019 |
| SCAI promotes error‐free repair of DNA interstrand crosslinks via the Fanconi anemia pathway L Schubert, IA Hendriks, EPT Hertz, W Wu, S Sellés‐Baiget, S Hoffmann, ... EMBO reports 23 (4), e53639, 2022 | 18 | 2022 |
| Adversarial and variational autoencoders improve metagenomic binning PP Líndez, J Johansen, S Kutuzova, AI Sigurdsson, JN Nissen, ... Communications Biology 6 (1), 1073, 2023 | 12 | 2023 |
| Machine learning and deep learning applications in microbiome research. ISME Commun, 2 (1): 98 R Hernández Medina, S Kutuzova, KN Nielsen, J Johansen, LH Hansen, ... | 10 | 2022 |
| Global within-species phylogenetics of sewage microbes suggest that local adaptation shapes geographical bacterial clustering ML Jespersen, P Munk, J Johansen, RS Kaas, H Webel, H Vigre, ... Communications Biology 6 (1), 700, 2023 | 7 | 2023 |
| ICT solutions to support EV deployment AB Pedersen, B Andersen, JS Johansen, D Rua, J Ruela, JAP Lopes Electric Vehicle Integration into Modern Power Networks, 107-154, 2013 | 3 | 2013 |
| Hepatic arterial infusion (HAI) of oxaliplatin with capecitabine in first line treatment of patients (pts) with liver limited metastases from colorectal cancer (LLmCRC) BV Vittrup, HH Nørgaard, M Bergenfeldt, FO Larsen, E Høgdall, ... Annals of Oncology 29, viii173, 2018 | 2 | 2018 |
| CHAMP delivers accurate taxonomic profiles of the prokaryotes, eukaryotes, and bacteriophages in the human microbiome S Pita, PN Myers, J Johansen, J Russel, MC Nielsen, AC Eklund, ... Frontiers in Microbiology 15, 1425489, 2024 | 1 | 2024 |
| Gut heavy metal and antibiotic resistome of humans living in the high Arctic AL Hauptmann, J Johansen, FF Stæger, DS Nielsen, G Mulvad, ... Frontiers in Microbiology 15, 1493803, 2024 | | 2024 |
| Author Correction: Discovery of drug–omics associations in type 2 diabetes with generative deep-learning models RL Allesøe, AT Lundgaard, R Hernández Medina, A Aguayo-Orozco, ... nature biotechnology 41 (7), 1026-1026, 2023 | | 2023 |
