| Single-cell phenotyping within transparent intact tissue through whole-body clearing B Yang, JB Treweek, RP Kulkarni, BE Deverman, CK Chen, E Lubeck, ... Cell 158 (4), 945-958, 2014 | 1065 | 2014 |
| In situ transcription profiling of single cells reveals spatial organization of cells in the mouse hippocampus S Shah, E Lubeck, W Zhou, L Cai Neuron 92 (2), 342-357, 2016 | 693 | 2016 |
| Integrated spatial genomics reveals global architecture of single nuclei Y Takei, J Yun, S Zheng, N Ollikainen, N Pierson, J White, S Shah, ... Nature 590 (7845), 344-350, 2021 | 325 | 2021 |
| Dynamics and spatial genomics of the nascent transcriptome by intron seqFISH S Shah, Y Takei, W Zhou, E Lubeck, J Yun, CHL Eng, N Koulena, ... Cell 174 (2), 363-376. e16, 2018 | 323 | 2018 |
| Identification of spatially associated subpopulations by combining scRNAseq and sequential fluorescence in situ hybridization data Q Zhu, S Shah, R Dries, L Cai, GC Yuan Nature biotechnology 36 (12), 1183-1190, 2018 | 254 | 2018 |
| Single-molecule RNA detection at depth by hybridization chain reaction and tissue hydrogel embedding and clearing S Shah, E Lubeck, M Schwarzkopf, TF He, A Greenbaum, CH Sohn, ... Development 143 (15), 2862-2867, 2016 | 241 | 2016 |
| Multimodal Analysis of Cell Types in a Hypothalamic Node Controlling Social Behavior DJA Dong-Wook Kim,Zizhen Yao,Lucas T. Graybuck,Tae Kyung Kim,Thuc Nghi ... Cell 179 (3), 713-728, 2019 | 230 | 2019 |
| seqFISH accurately detects transcripts in single cells and reveals robust spatial organization in the hippocampus S Shah, E Lubeck, W Zhou, L Cai Neuron 94 (4), 752-758. e1, 2017 | 142 | 2017 |
| Profiling the transcriptome with RNA SPOTs CHL Eng, S Shah, J Thomassie, L Cai Nature methods 14 (12), 1153-1155, 2017 | 120 | 2017 |
| Error correction of multiplex imaging analysis by sequential hybridization L Cai, S Shah, E Lubeck, W Zhou US Patent 10,510,435, 2019 | 117 | 2019 |
| Single-cell nuclear architecture across cell types in the mouse brain Y Takei, S Zheng, J Yun, S Shah, N Pierson, J White, S Schindler, ... Science 374 (6567), 586-594, 2021 | 95 | 2021 |
| Multiplexed dynamic imaging of genomic loci by combined CRISPR imaging and DNA sequential FISH Y Takei, S Shah, S Harvey, LS Qi, L Cai Biophysical journal 112 (9), 1773-1776, 2017 | 85 | 2017 |
| Multiplex labeling of molecules by sequential hybridization barcoding L Cai, E Lubeck, T Zhiyentayev, A Coskun, TF He, CH Sohn, S Shah US Patent 10,457,980, 2019 | 77 | 2019 |
| Sequential probing of molecular targets based on pseudo-color barcodes with embedded error correction mechanism L Cai, CH Eng, S Shah US Patent App. 16/322,462, 2021 | 67 | 2021 |
| An automated live imaging platform for studying merozoite egress-invasion in malaria cultures AJ Crick, T Tiffert, SM Shah, J Kotar, VL Lew, P Cicuta Biophysical journal 104 (5), 997-1005, 2013 | 31 | 2013 |
| Cylinders vs. spheres: biofluid shear thinning in driven nanoparticle transport JA Cribb, TD Meehan, SM Shah, K Skinner, R Superfine Annals of biomedical engineering 38, 3311-3322, 2010 | 25 | 2010 |
| Nonlinear signatures of entangled polymer solutions in active microbead rheology JA Cribb, PA Vasquez, P Moore, S Norris, S Shah, MG Forest, ... Journal of rheology 57, 1247, 2013 | 13 | 2013 |
| Multiplexing and quantification in PCR with reduced hardware and requirements IR Malik, XL Madero, EF Garcia, SM Shah, A Scherer US Patent 9,791,372, 2017 | 10 | 2017 |
| MULTIPLEX LABELING OF MOLECULES BY SEQUENTIAL HYBRIDIZATION BARCODING L Cai, E Lubeck, T Zhiyentayev, A Coskun, CH Sohn, S Shah US Patent App. 18/906,096, 2025 | | 2025 |
| Multiplexing and quantification in pcr with reduced hardware and requirements IR Malik, XL Madero, EF Garcia, SM Shah, A Scherer US Patent App. 18/592,324, 2024 | | 2024 |
