| Genome sequencing and analysis of the model grass Brachypodium distachyon DNA sequencing and assembly Barry Kerrie 5 Lucas Susan 5 Harmon-Smith ... Nature 463 (7282), 763-768, 2010 | 1945 | 2010 |
| Life and death in the soil microbiome: how ecological processes influence biogeochemistry NW Sokol, E Slessarev, GL Marschmann, A Nicolas, SJ Blazewicz, ... Nature Reviews Microbiology 20 (7), 415-430, 2022 | 661 | 2022 |
| Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill OU Mason, NM Scott, A Gonzalez, A Robbins-Pianka, J Bælum, J Kimbrel, ... The ISME journal 8 (7), 1464-1475, 2014 | 406 | 2014 |
| The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes SMD Seaver, F Liu, Q Zhang, J Jeffryes, JP Faria, JN Edirisinghe, ... Nucleic acids research 49 (D1), D575-D588, 2021 | 208 | 2021 |
| Recombineering and stable integration of the Pseudomonas syringae pv. syringae 61 hrp/hrc cluster into the genome of the soil bacterium Pseudomonas fluorescens Pf0‐1 WJ Thomas, CA Thireault, JA Kimbrel, JH Chang The Plant Journal 60 (5), 919-928, 2009 | 149 | 2009 |
| Copper delivery by the copper chaperone for chloroplast and cytosolic copper/zinc-superoxide dismutases: regulation and unexpected phenotypes in an Arabidopsis mutant CM Cohu, SE Abdel-Ghany, KAG Reynolds, AM Onofrio, JR Bodecker, ... Molecular Plant 2 (6), 1336-1350, 2009 | 95 | 2009 |
| GENE-counter: a computational pipeline for the analysis of RNA-Seq data for gene expression differences JS Cumbie, JA Kimbrel, Y Di, DW Schafer, LJ Wilhelm, SE Fox, ... PloS one 6 (10), e25279, 2011 | 91 | 2011 |
| Attachment between heterotrophic bacteria and microalgae influences symbiotic microscale interactions TJ Samo, JA Kimbrel, DJ Nilson, J Pett‐Ridge, PK Weber, X Mayali Environmental microbiology 20 (12), 4385-4400, 2018 | 89 | 2018 |
| Mutualistic Co-evolution of Type III Effector Genes in Sinorhizobium fredii and Bradyrhizobium japonicum JA Kimbrel, WJ Thomas, Y Jiang, AL Creason, CA Thireault, JL Sachs, ... PLoS Pathogens 9 (2), e1003204, 2013 | 83 | 2013 |
| Host selection and stochastic effects influence bacterial community assembly on the microalgal phycosphere JA Kimbrel, TJ Samo, C Ward, D Nilson, MP Thelen, A Siccardi, P Zimba, ... Algal Research 40, 101489, 2019 | 81 | 2019 |
| An improved, high-quality draft genome sequence of the Germination-Arrest Factor-producing Pseudomonas fluorescens WH6 JA Kimbrel, SA Givan, AB Halgren, AL Creason, DI Mills, GM Banowetz, ... BMC genomics 11, 1-15, 2010 | 69 | 2010 |
| Complete genome sequence of the lignin-degrading bacterium Klebsiella sp. strain BRL6-2 HL Woo, NR Ballor, TC Hazen, JL Fortney, B Simmons, KW Davenport, ... Standards in genomic sciences 9, 1-9, 2014 | 68 | 2014 |
| Active virus-host interactions at sub-freezing temperatures in Arctic peat soil G Trubl, JA Kimbrel, J Liquet-Gonzalez, EE Nuccio, PK Weber, ... Microbiome 9, 1-15, 2021 | 65 | 2021 |
| The membrane‐associated monooxygenase in the butane‐oxidizing Gram‐positive bacterium Nocardioides sp. strain CF8 is a novel member of the AMO/PMO family LA Sayavedra‐Soto, N Hamamura, CW Liu, JA Kimbrel, JH Chang, ... Environmental microbiology reports 3 (3), 390-396, 2011 | 65 | 2011 |
| Combining multiple functional annotation tools increases coverage of metabolic annotation M Griesemer, JA Kimbrel, CE Zhou, A Navid, P D’haeseleer BMC genomics 19, 1-11, 2018 | 58 | 2018 |
| multiPhATE: bioinformatics pipeline for functional annotation of phage isolates CL Ecale Zhou, S Malfatti, J Kimbrel, C Philipson, K McNair, T Hamilton, ... Bioinformatics 35 (21), 4402-4404, 2019 | 54 | 2019 |
| Microbial community structure and functional potential along a hypersaline gradient JA Kimbrel, N Ballor, YW Wu, MM David, TC Hazen, BA Simmons, ... Frontiers in microbiology 9, 1492, 2018 | 52 | 2018 |
| Plant-associated fungi support bacterial resilience following water limitation R Hestrin, M Kan, M Lafler, J Wollard, JA Kimbrel, P Ray, SJ Blazewicz, ... The ISME Journal 16 (12), 2752-2762, 2022 | 43 | 2022 |
| HT-SIP: a semi-automated stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal fungi EE Nuccio, SJ Blazewicz, M Lafler, AN Campbell, A Kakouridis, ... Microbiome 10 (1), 199, 2022 | 43 | 2022 |
| Bacterial response to spatial gradients of algal-derived nutrients in a porous microplate H Kim, JA Kimbrel, CA Vaiana, JR Wollard, X Mayali, CR Buie The ISME Journal 16 (4), 1036-1045, 2022 | 39 | 2022 |