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Brian G. Pierce
Brian G. Pierce
Associate Professor, Department of Cell Biology and Molecular Genetics, IBBR, University of Maryland
Подтвержден адрес электронной почты в домене umd.edu - Главная страница
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Процитировано
Процитировано
Год
ZDOCK server: interactive docking prediction of protein–protein complexes and symmetric multimers
BG Pierce, K Wiehe, H Hwang, BH Kim, T Vreven, Z Weng
Bioinformatics 30 (12), 1771-1773, 2014
16992014
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
J Wang, J Zhuang, S Iyer, XY Lin, TW Whitfield, MC Greven, BG Pierce, ...
Genome research 22 (9), 1798-1812, 2012
10812012
Macromolecular modeling and design in Rosetta: recent methods and frameworks
JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ...
Nature methods 17 (7), 665-680, 2020
7322020
Accelerating Protein Docking in ZDOCK Using an Advanced 3D Convolution Library
BG Pierce, Y Hourai, Z Weng
PloS one 6 (9), e24657, 2011
6452011
ZRANK: reranking protein docking predictions with an optimized energy function
B Pierce, Z Weng
PROTEINS: Structure, Function, and Bioinformatics 67 (4), 1078-1086, 2007
5252007
Updates to the integrated protein–protein interaction benchmarks: docking benchmark version 5 and affinity benchmark version 2
T Vreven, IH Moal, A Vangone, BG Pierce, PL Kastritis, M Torchala, ...
Journal of molecular biology 427 (19), 3031-3041, 2015
4682015
Factorbook. org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium
J Wang, J Zhuang, S Iyer, XY Lin, MC Greven, BH Kim, J Moore, ...
Nucleic acids research 41 (D1), D171-D176, 2012
4492012
Integrating statistical pair potentials into protein complex prediction
J Mintseris, B Pierce, K Wiehe, R Anderson, R Chen, Z Weng
Proteins: Structure, Function, and Bioinformatics 69 (3), 511-520, 2007
3842007
Protein–protein docking benchmark 2.0: an update
J Mintseris, K Wiehe, B Pierce, R Anderson, R Chen, J Janin, Z Weng
Proteins: Structure, Function, and Bioinformatics 60 (2), 214-216, 2005
3732005
Protein–protein docking benchmark version 3.0
H Hwang, B Pierce, J Mintseris, J Janin, Z Weng
Proteins: Structure, Function, and Bioinformatics 73 (3), 705-709, 2008
3182008
Benchmarking AlphaFold for protein complex modeling reveals accuracy determinants
R Yin, BY Feng, A Varshney, BG Pierce
Protein Science 31 (8), e4379, 2022
2462022
M-ZDOCK: a grid-based approach for Cn symmetric multimer docking
B Pierce, W Tong, Z Weng
Bioinformatics 21 (8), 1472-1478, 2005
2202005
A combination of rescoring and refinement significantly improves protein docking performance
B Pierce, Z Weng
Proteins: Structure, Function, and Bioinformatics 72 (1), 270-279, 2008
1812008
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
1692016
Community-wide assessment of protein-interface modeling suggests improvements to design methodology
SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ...
Journal of molecular biology 414 (2), 289-302, 2011
1592011
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment
MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019
1282019
ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5
K Wiehe, B Pierce, J Mintseris, WW Tong, R Anderson, R Chen, Z Weng
Proteins: Structure, Function, and Bioinformatics 60 (2), 207-213, 2005
1282005
Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions
R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ...
Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013
1152013
An expanded benchmark for antibody-antigen docking and affinity prediction reveals insights into antibody recognition determinants
JD Guest, T Vreven, J Zhou, I Moal, JR Jeliazkov, JJ Gray, Z Weng, ...
Structure 29 (6), 606-621. e5, 2021
1122021
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment
MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ...
Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021
1042021
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