| Estimated transmissibility and impact of SARS-CoV-2 lineage B. 1.1. 7 in England NG Davies, S Abbott, RC Barnard, CI Jarvis, AJ Kucharski, JD Munday, ... Science 372 (6538), eabg3055, 2021 | 2738 | 2021 |
| SARS-CoV-2 titers in wastewater are higher than expected from clinically confirmed cases F Wu, J Zhang, A Xiao, X Gu, WL Lee, F Armas, K Kauffman, W Hanage, ... Msystems 5 (4), 10.1128/msystems. 00614-20, 2020 | 855 | 2020 |
| Establishing microbial composition measurement standards with reference frames JT Morton, C Marotz, A Washburne, J Silverman, LS Zaramela, A Edlund, ... Nature communications 10 (1), 2719, 2019 | 578 | 2019 |
| Estimated transmissibility and severity of novel SARS-CoV-2 Variant of Concern 202012/01 in England NG Davies, S Abbott, RC Barnard, CI Jarvis, AJ Kucharski, J Munday, ... MedRxiv, 2020.12. 24.20248822, 2020 | 364 | 2020 |
| A phylogenetic transform enhances analysis of compositional microbiota data JD Silverman, AD Washburne, S Mukherjee, LA David Elife 6, e21887, 2017 | 334 | 2017 |
| The microbiome stress project: toward a global meta-analysis of environmental stressors and their effects on microbial communities JD Rocca, M Simonin, JR Blaszczak, JG Ernakovich, SM Gibbons, ... Frontiers in microbiology 9, 3272, 2019 | 186 | 2019 |
| Using influenza surveillance networks to estimate state-specific prevalence of SARS-CoV-2 in the United States JD Silverman, N Hupert, AD Washburne Science translational medicine 12 (554), eabc1126, 2020 | 120 | 2020 |
| Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets AD Washburne, JD Silverman, JW Leff, DJ Bennett, JL Darcy, ... PeerJ 5, e2969, 2017 | 119 | 2017 |
| Prioritizing surveillance of Nipah virus in India RK Plowright, DJ Becker, DE Crowley, AD Washburne, T Huang, ... PLoS neglected tropical diseases 13 (6), e0007393, 2019 | 114 | 2019 |
| Signatures of ecological processes in microbial community time series K Faust, F Bauchinger, B Laroche, S De Buyl, L Lahti, AD Washburne, ... Microbiome 6, 1-13, 2018 | 106 | 2018 |
| Methods for phylogenetic analysis of microbiome data AD Washburne, JT Morton, J Sanders, D McDonald, Q Zhu, AM Oliverio, ... Nature microbiology 3 (6), 652-661, 2018 | 93 | 2018 |
| Rare microbial taxa emerge when communities collide: freshwater and marine microbiome responses to experimental mixing JD Rocca, M Simonin, ES Bernhardt, AD Washburne, JP Wright Ecology 101 (3), e02956, 2020 | 89 | 2020 |
| Fitness tradeoffs between spores and nonaggregating cells can explain the coexistence of diverse genotypes in cellular slime molds CE Tarnita, A Washburne, R Martinez-Garcia, AE Sgro, SA Levin Proceedings of the National Academy of Sciences 112 (9), 2776-2781, 2015 | 79 | 2015 |
| Phylofactorization: a graph partitioning algorithm to identify phylogenetic scales of ecological data AD Washburne, JD Silverman, JT Morton, DJ Becker, D Crowley, ... Ecological Monographs 89 (2), e01353, 2019 | 66 | 2019 |
| The ecology and diversity of microbial eukaryotes in geothermal springs AM Oliverio, JF Power, A Washburne, SC Cary, MB Stott, N Fierer The ISME journal 12 (8), 1918-1928, 2018 | 66 | 2018 |
| Estimated transmissibility and impact of SARS-CoV-2 lineage B. 1.1. 7 in England. Science 372: eabg3055 NG Davies, S Abbott, RC Barnard, CI Jarvis, AJ Kucharski, JD Munday, ... | 65 | 2021 |
| Dynamic and integrative approaches to understanding pathogen spillover DJ Becker, AD Washburne, CL Faust, JRC Pulliam, EA Mordecai, ... Philosophical Transactions of the Royal Society B 374 (1782), 20190014, 2019 | 62 | 2019 |
| Microdiversity characterizes prevalent phylogenetic clades in the glacier-fed stream microbiome S Fodelianakis, AD Washburne, M Bourquin, P Pramateftaki, TJ Kohler, ... The ISME Journal 16 (3), 666-675, 2022 | 55 | 2022 |
| Guiding longitudinal sampling in IBD cohorts Y Vázquez-Baeza, A Gonzalez, ZZ Xu, A Washburne, HH Herfarth, ... Gut 67 (9), 1743-1745, 2018 | 45 | 2018 |
| The problem of scale in the prediction and management of pathogen spillover DJ Becker, AD Washburne, CL Faust, EA Mordecai, RK Plowright Philosophical Transactions of the Royal Society B 374 (1782), 20190224, 2019 | 44 | 2019 |