| DeNovoGear: de novo indel and point mutation discovery and phasing A Ramu, MJ Noordam, RS Schwartz, A Wuster, ME Hurles, RA Cartwright, ... Nature methods 10 (10), 985-987, 2013 | 206 | 2013 |
| Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the North American tiger salamander (Ambystoma tigrinum) species … EM O'Neill, R Schwartz, CT Bullock, JS Williams, HB Shaffer, ... Molecular ecology 22 (1), 111-129, 2013 | 147 | 2013 |
| Phylogenomic reconstruction supports supercontinent origins for Leishmania KM Harkins, RS Schwartz, RA Cartwright, AC Stone Infection, Genetics and Evolution 38, 101-109, 2016 | 83 | 2016 |
| Branch length estimation and divergence dating: estimates of error in Bayesian and maximum likelihood frameworks RS Schwartz, RL Mueller BMC Evolutionary Biology 10, 1-21, 2010 | 67 | 2010 |
| Whole Genome Sequencing of Field Isolates Reveals Extensive Genetic Diversity in Plasmodium vivax from Colombia DJ Winter, MA Pacheco, AF Vallejo, RS Schwartz, M Arevalo-Herrera, ... PLoS neglected tropical diseases 9 (12), e0004252, 2015 | 60 | 2015 |
| A composite genome approach to identify phylogenetically informative data from next-generation sequencing RS Schwartz, KM Harkins, AC Stone, RA Cartwright BMC bioinformatics 16, 1-10, 2015 | 34 | 2015 |
| The importance of selection in the evolution of blindness in cavefish RA Cartwright, RS Schwartz, AL Merry, MM Howell BMC Evolutionary Biology 17, 1-14, 2017 | 30 | 2017 |
| Extensive genome-wide duplications in the eastern oyster (Crassostrea virginica) TH Modak, R Literman, JB Puritz, KM Johnson, EM Roberts, D Proestou, ... Philosophical Transactions of the Royal Society B 376 (1825), 20200164, 2021 | 26 | 2021 |
| The why, when, and how of computing in biology classrooms AM Wright, RS Schwartz, JR Oaks, CE Newman, SP Flanagan F1000Research 8, 1854, 2020 | 24 | 2020 |
| Estimating error models for whole genome sequencing using mixtures of Dirichlet-multinomial distributions SH Wu, RS Schwartz, DJ Winter, DF Conrad, RA Cartwright Bioinformatics 33 (15), 2322-2329, 2017 | 21 | 2017 |
| Genome-scale profiling reveals noncoding loci carry higher proportions of concordant data R Literman, R Schwartz Molecular Biology and Evolution, 2021 | 16 | 2021 |
| Characterization of microsatellite loci in Sacramento perch (Archoplites interruptus) RS Schwartz, B May Molecular Ecology Notes 4 (4), 694-697, 2004 | 14 | 2004 |
| Variation in DNA substitution rates among lineages erroneously inferred from simulated clock-like data RS Schwartz, RL Mueller PLoS One 5 (3), e9649, 2010 | 9 | 2010 |
| Genetic evaluation of isolated populations for use in reintroductions reveals significant genetic bottlenecks in potential stocks of Sacramento perch RS Schwartz, B May Transactions of the American Fisheries Society 137 (6), 1764-1777, 2008 | 8 | 2008 |
| Limited effects of among-lineage rate variation on the phylogenetic performance of molecular markers RS Schwartz, RL Mueller Molecular Phylogenetics and Evolution 54 (3), 849-856, 2010 | 7 | 2010 |
| Metamorphosis imposes variable constraints on genome expansion through effects on development RL Mueller, CE Cressler, RS Schwartz, RA Chong, MA Butler Integrative Organismal Biology 5 (1), obad015, 2023 | 5 | 2023 |
| Reference‐free discovery of nuclear SNPs permits accurate, sensitive identification of Carya (hickory) species and hybrids RA Literman, BM Ott, J Wen, LJ Grauke, RS Schwartz, SM Handy Applications in Plant Sciences 10 (1), e11455, 2022 | 4 | 2022 |
| Efficient distance calculations between genomes using mathematical approximation Y Hrytsenko, NM Daniels, RS Schwartz Proceedings of the 2018 ACM International Conference on Bioinformatics …, 2018 | 4 | 2018 |
| Phylogenomic investigation of lampreys (Petromyzontiformes) B Smith, A Walling, R Schwartz Molecular Phylogenetics and Evolution 189, 107942, 2023 | 3 | 2023 |
| Interrogating Genomic Data in the Phylogenetic Placement of Treeshrews Reveals Potential Sources of Conflict A Knyshov, Y Hrytsenko, R Literman, RS Schwartz bioRxiv, 2021.11. 18.469131, 2021 | 2 | 2021 |