| Exome sequencing of hepatocellular carcinomas identifies new mutational signatures and potential therapeutic targets K Schulze, S Imbeaud, E Letouzé, LB Alexandrov, J Calderaro, ... Nature genetics 47 (5), 505-511, 2015 | 1795 | 2015 |
| Mutational signatures reveal the dynamic interplay of risk factors and cellular processes during liver tumorigenesis E Letouzé, J Shinde, V Renault, G Couchy, JF Blanc, E Tubacher, ... Nature communications 8 (1), 1315, 2017 | 274 | 2017 |
| Mutational signature analysis identifies MUTYH deficiency in colorectal cancers and adrenocortical carcinomas C Pilati, J Shinde, LB Alexandrov, G Assié, T André, Z Hélias‐Rodzewicz, ... The Journal of pathology 242 (1), 10-15, 2017 | 160 | 2017 |
| Cyclin A2/E1 activation defines a hepatocellular carcinoma subclass with a rearrangement signature of replication stress Q Bayard, L Meunier, C Peneau, V Renault, J Shinde, JC Nault, I Mami, ... Nature Communications 9 (1), 5235, 2018 | 159 | 2018 |
| Palimpsest: an R package for studying mutational and structural variant signatures along clonal evolution in cancer J Shinde, Q Bayard, S Imbeaud, TZ Hirsch, F Liu, V Renault, ... Bioinformatics 34 (19), 3380-3381, 2018 | 68 | 2018 |
| Mutational processes in hepatocellular carcinoma: the story of aristolochic acid JC Nault, E Letouzé Seminars in liver disease 39 (03), 334-340, 2019 | 35 | 2019 |
| Nestin as a diagnostic and prognostic marker for combined hepatocellular-cholangiocarcinoma J Calderaro, L Di Tommaso, P Maillé, A Beaufrère, CT Nguyen, L Heij, ... Journal of hepatology 77 (6), 1586-1597, 2022 | 21 | 2022 |
| Imaging-AMARETTO: an imaging genomics software tool to interrogate multiomics networks for relevance to radiography and histopathology imaging biomarkers of clinical outcomes O Gevaert, M Nabian, S Bakr, C Everaert, J Shinde, A Manukyan, ... JCO clinical cancer informatics 4, 421-435, 2020 | 12 | 2020 |
| Introduction to AMARETTO J Shinde, C Everaert, S Bakr, M Nabian, J Xu, V Carey, N Pochet, ... | | 2019 |
| Introduction to Palimpsest J Shinde, Q Bayard, S Imbeaud, T Hirsch, F Liu, V Renault, ... | | 2018 |
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| Mutational signature analysis identifies deficiency in colorectal cancers and adrenocortical carcinomas C Pilati, J Shinde, LB Alexandrov, G Assie, T Andre, JF Emile, D LeCorre, ... | | |
| Imaging-AMARETTO: a software tool for imaging genomics in cancer O Gevaert, M Nabian, S Bakr, C Everaert, J Shinde, A Manukyan, ... | | |
| Intended for: Nature Communications C Pilati, J Shinde, LB Alexandrov, G Assie, T Andre, JF Emile, D LeCorre, ... | | |