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Jaap Heringa
Jaap Heringa
Professor of Bioinformatics, Vrije Universiteit Amsterdam
Подтвержден адрес электронной почты в домене vu.nl
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Процитировано
Процитировано
Год
The FAIR Guiding Principles for scientific data management and stewardship
MD Wilkinson, M Dumontier, IJJ Aalbersberg, G Appleton, M Axton, ...
Scientific data 3 (1), 1-9, 2016
161352016
T-Coffee: A novel method for fast and accurate multiple sequence alignment
C Notredame, DG Higgins, J Heringa
Journal of molecular biology 302 (1), 205-217, 2000
89002000
PRALINE: a multiple sequence alignment toolbox that integrates homology-extended and secondary structure information
VA Simossis, J Heringa
Nucleic acids research 33 (suppl_2), W289-W294, 2005
5892005
An analysis of protein domain linkers: their classification and role in protein folding
RA George, J Heringa
Protein engineering 15 (11), 871-879, 2002
5572002
A simple and fast secondary structure prediction method using hidden neural networks
K Lin, VA Simossis, WR Taylor, J Heringa
Bioinformatics 21 (2), 152-159, 2005
3662005
FAIR principles: interpretations and implementation considerations
A Jacobsen, R de Miranda Azevedo, N Juty, D Batista, S Coles, R Cornet, ...
Data intelligence 2 (1-2), 10-29, 2020
3432020
The KH domain occurs in a diverse set of RNA‐binding proteins that include the antiterminator NusA and is probably involved in binding to nucleic acid
TJ Gibson, JD Thompson, J Heringa
FEBS letters 324 (3), 361-366, 1993
2671993
General secretion signal for the mycobacterial type VII secretion pathway
MH Daleke, R Ummels, P Bawono, J Heringa, ...
Proceedings of the National Academy of Sciences 109 (28), 11342-11347, 2012
2302012
Two strategies for sequence comparison: profile-preprocessed and secondary structure-induced multiple alignment
J Heringa
Computers & chemistry 23 (3-4), 341-364, 1999
2001999
Interaction of transmembrane helices by a knobs‐into‐holes packing characteristic of soluble coiled coils
D Langosch, J Heringa
Proteins: Structure, Function, and Bioinformatics 31 (2), 150-159, 1998
1941998
The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016)
M Wilkinson, M Dumontier, I Aalbersberg, G Appleton, M Axton, A Baak, ...
1692016
Tracking repeats using significance and transitivty.
R Szklarczyk, J Heringa
Bioinformatics 20 (Suppl 1), i311-i317, 2004
1682004
Protein secondary structure prediction
W Pirovano, J Heringa
Data Mining Techniques for the Life Sciences, 327-348, 2010
1582010
Homology-extended sequence alignment
VA Simossis, J Kleinjung, J Heringa
Nucleic acids research 33 (3), 816-824, 2005
1442005
PRALINE™: a strategy for improved multiple alignment of transmembrane proteins
W Pirovano, KA Feenstra, J Heringa
Bioinformatics 24 (4), 492-497, 2008
1412008
The ontogeny of a dominance hierarchy in colonies of the bumblebee Bombus terrestris (Hymenoptera, Apidae)
A Van Doorn, J Heringa
Insectes soc 33 (3), 25, 1986
1411986
PhyloPars: estimation of missing parameter values using phylogeny
J Bruggeman, J Heringa, BW Brandt
Nucleic acids research 37 (suppl_2), W179-W184, 2009
1322009
Side-chain clusters in protein structures and their role in protein folding
J Heringa, P Argos
Journal of molecular biology 220 (1), 151-171, 1991
1281991
SnapDRAGON: a method to delineate protein structural domains from sequence data
RA George, J Heringa
Journal of molecular biology 316 (3), 839-851, 2002
1232002
Addendum: The FAIR Guiding Principles for scientific data management and stewardship
MD Wilkinson, M Dumontier, I Jan Aalbersberg, G Appleton, M Axton, ...
Scientific data 6 (1), 6, 2019
1222019
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