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Vijini Mallawaarachchi
Vijini Mallawaarachchi
Research Fellow at Flinders University
Overená e-mailová adresa na: flinders.edu.au - Domovská stránka
Názov
Citované v
Citované v
Rok
GraphBin: refined binning of metagenomic contigs using assembly graphs
V Mallawaarachchi, A Wickramarachchi, Y Lin
Bioinformatics 36 (11), 3307-3313, 2020
822020
The human gut virome: composition, colonization, interactions, and impacts on human health
E Pargin, MJ Roach, A Skye, B Papudeshi, LK Inglis, V Mallawaarachchi, ...
Frontiers in Microbiology 14, 963173, 2023
332023
MetaBCC-LR: Metagenomics Binning by Coverage and Composition for Long Reads
A Wickramarachchi, V Mallawaarachchi, V Rajan, Y Lin
28th Conf. on Intelligent Systems for Molecular Biology ISMB'20, 2020
282020
Managing complex workflows in bioinformatics: an interactive toolkit with gpu acceleration
A Welivita, I Perera, D Meedeniya, A Wickramarachchi, ...
IEEE transactions on nanobioscience 17 (3), 199-208, 2018
262018
Change Detection and Notification of Webpages: A Survey
V Mallawaarachchi, L Meegahapola, R Alwis, E Nimalarathna, ...
ACM Computing Surveys 53 (1), 2020
242020
Ten simple rules and a template for creating workflows-as-applications
MJ Roach, NT Pierce-Ward, R Suchecki, V Mallawaarachchi, ...
PLoS computational biology 18 (12), e1010705, 2022
202022
MetaCoAG: Binning metagenomic contigs via composition, coverage and assembly graphs
V Mallawaarachchi, Y Lin
International Conference on Research in Computational Molecular Biology, 70-85, 2022
202022
Dnaapler: a tool to reorient circular microbial genomes
G Bouras, SR Grigson, B Papudeshi, V Mallawaarachchi, M Roach
Journal of Open Source Software 9 (93), 5968, 2024
192024
Phables: from fragmented assemblies to high-quality bacteriophage genomes
V Mallawaarachchi, MJ Roach, P Decewicz, B Papudeshi, SK Giles, ...
Bioinformatics 39 (10), btad586, 2023
192023
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies
G Bouras, G Houtak, RR Wick, V Mallawaarachchi, MJ Roach, ...
Microbial Genomics 10 (5), 2024
182024
Plassembler: an automated bacterial plasmid assembly tool
G Bouras, AE Sheppard, V Mallawaarachchi, S Vreugde
Bioinformatics 39 (7), btad409, 2023
18*2023
Improving metagenomic binning results with overlapped bins using assembly graphs
VG Mallawaarachchi, AS Wickramarachchi, Y Lin
Algorithms for Molecular Biology 16, 1-18, 2021
172021
GraphBin2: Refined and overlapped binning of metagenomic contigs using assembly graphs
VG Mallawaarachchi, AS Wickramarachchi, Y Lin
20th International Workshop on Algorithms in Bioinformatics, WABI 2020, 8, 2020
172020
Quantitative metaproteomics reveals composition and metabolism characteristics of microbial communities in Chinese liquor fermentation starters
J Zhao, Y Yang, L Chen, J Zheng, X Lv, D Li, Z Fang, C Shen, ...
Frontiers in Microbiology 13, 5215, 2023
162023
RepBin: Constraint-based graph representation learning for metagenomic binning
H Xue, V Mallawaarachchi, Y Zhang, V Rajan, Y Lin
Proceedings of the 36th AAAI Conference on Artificial Intelligence 36 (4 …, 2022
152022
Accurate binning of metagenomic contigs using composition, coverage, and assembly graphs
V Mallawaarachchi, Y Lin
Journal of Computational Biology 29 (12), 1357-1376, 2022
122022
Host interactions of novel Crassvirales species belonging to multiple families infecting bacterial host, Bacteroides cellulosilyticus WH2
B Papudeshi, AA Vega, C Souza, SK Giles, V Mallawaarachchi, ...
Microbial Genomics 9 (9), 2023
11*2023
Experiential learning in bioinformatics–learner support for complex workflow modelling and analysis
V Mallawaarachchi, A Wickaramarachchi, A Weliwita, I Perera, ...
International Journal of Emerging Technologies in Learning 13 (12), 19-34, 2018
112018
Metaproteomics profiling of the microbial communities in fermentation starters (Daqu) during multi-round production of Chinese liquor
J Zhao, Y Yang, M Teng, J Zheng, B Wang, V Mallawaarachchi, Y Lin, ...
Frontiers in Nutrition 10, 1139836, 2023
82023
Contigs directed gene annotation (ConDiGA) for accurate protein sequence database construction in metaproteomics
E Wu, V Mallawaarachchi, J Zhao, Y Yang, H Liu, X Wang, C Shen, Y Lin, ...
Microbiome 12, 58, 2024
72024
Systém momentálne nemôže vykonať operáciu. Skúste to neskôr.
Články 1–20