| Best practices for single-cell analysis across modalities L Heumos, AC Schaar, C Lance, A Litinetskaya, F Drost, L Zappia, ... Nature Reviews Genetics 24 (8), 550-572, 2023 | 581 | 2023 |
| decoupleR: ensemble of computational methods to infer biological activities from omics data P Badia-i-Mompel, J Vélez Santiago, J Braunger, C Geiss, D Dimitrov, ... Bioinformatics advances 2 (1), vbac016, 2022 | 385 | 2022 |
| Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data D Dimitrov, D Türei, M Garrido-Rodriguez, PL Burmedi, JS Nagai, C Boys, ... Nature communications 13 (1), 3224, 2022 | 343* | 2022 |
| LIANA+ provides an all-in-one framework for cell–cell communication inference D Dimitrov, PSL Schäfer, E Farr, P Rodriguez-Mier, S Lobentanzer, ... Nature Cell Biology 26 (9), 1613-1622, 2024 | 43* | 2024 |
| Multicellular factor analysis of single-cell data for a tissue-centric understanding of disease ROR Flores, JD Lanzer, D Dimitrov, B Velten, J Saez-Rodriguez Elife 12, e93161, 2023 | 26 | 2023 |
| How will artificial intelligence and bioinformatics change our understanding of IgA Nephropathy in the next decade? RD Bülow, D Dimitrov, P Boor, J Saez-Rodriguez Seminars in Immunopathology 43 (5), 739-752, 2021 | 26 | 2021 |
| Integrating single-cell multi-omics and prior biological knowledge for a functional characterization of the immune system PSL Schäfer, D Dimitrov, EJ Villablanca, J Saez-Rodriguez Nature Immunology 25 (3), 405-417, 2024 | 17 | 2024 |
| Combining LIANA and Tensor-cell2cell to decipher cell-cell communication across multiple samples HM Baghdassarian, D Dimitrov, E Armingol, J Saez-Rodriguez, NE Lewis Cell reports methods 4 (4), 2024 | 10 | 2024 |
| Defining and benchmarking open problems in single-cell analysis MD Luecken, S Gigante, DB Burkhardt, R Cannoodt, DC Strobl, ... Research Square, rs. 3. rs-4181617, 2024 | 10 | 2024 |
| BingleSeq: a user-friendly R package for bulk and single-cell RNA-Seq data analysis D Dimitrov, Q Gu PeerJ 8, e10469, 2020 | 9 | 2020 |
| Single-cell integration reveals metaplasia in inflammatory gut diseases AJ Oliver, N Huang, R Bartolome-Casado, R Li, S Koplev, HR Nilsen, ... Nature 635 (8039), 699-707, 2024 | 6 | 2024 |
| MetalinksDB: a flexible and contextualizable resource of metabolite-protein interactions E Farr, D Dimitrov, C Schmidt, D Turei, S Lobentanzer, A Dugourd, ... Briefings in Bioinformatics 25 (4), bbae347, 2024 | 4 | 2024 |
| Clarifying the murk: unveiling bacterial dynamics in response to crude oil pollution, Corexit-dispersant, and natural sunlight in the Gulf of Mexico S Matallana-Surget, LM Nigro, LA Waidner, P Lebaron, R Wattiez, ... Frontiers in Marine Science 10, 1337886, 2024 | 2 | 2024 |
| LIANA+ _Integrating_MultiOmics_Data D Dimitrov, PSL Schäfer, E Farr, P Rodriguez-Mier, S Lobentanzer, ... | 1 | 2024 |
| Unveiling the role of sex in the metabolism of indoxyl sulfate and apixaban B Pina-Beltran, D Dimitrov, N McKay, M Giot, Z Zdráhal, D Potěšil, ... Scientific Reports 15 (1), 6075, 2025 | | 2025 |
| Unraveling the influence of Indoxyl Sulfate and apixaban in drug metabolism and elimination: Is sex a major player? B Pina-Beltran, S Poitevin, D Dimitrov, JS Rodriguez, J Peinado, ... | | 2024 |
| VIB Hackathon on spatial omics tools and methods B Rombaut, L Pollaris, C Sang-aram, MV Cruysse, R Cannoodt, ... | | 2024 |
| RIDDEN: Data-driven inference of receptor activity from transcriptomic data S Barsi, E Varga, D Dimitrov, J Saez-Rodriguez, L Hunyady, B Szalai bioRxiv, 2024.12. 03.626558, 2024 | | 2024 |
| Modelling Cell-cell Communication using Prior Knowledge with Single-cell and Spatially-resolved Omics Data D Dimitrov | | 2024 |
| How will artificial intelligence and bioinformatics change our understanding of IgA Nephropathy in the next decade?(Apr, 10.1007/s00281-021-00847-y, 2021) RD Bulow, D Dimitrov, P Boor, J Saez-Rodriguez SEMINARS IN IMMUNOPATHOLOGY 43 (5), 753-753, 2021 | | 2021 |
Julio Saez RodriguezHeidelberg UniversityOverená e-mailová adresa na: uni-heidelberg.de