| Deciphering a transcriptional regulatory code: modeling short‐range repression in the Drosophila embryo WD Fakhouri, A Ay, R Sayal, J Dresch, E Dayringer, DN Arnosti Molecular systems biology 6 (1), 341, 2010 | 164 | 2010 |
| Network structure, and vaccination strategy and effort interact to affect the dynamics of influenza epidemics G Hartvigsen, JM Dresch, AL Zielinski, AJ Macula, CC Leary Journal of theoretical biology 246 (2), 205-213, 2007 | 63 | 2007 |
| Thermodynamic modeling of transcription: sensitivity analysis differentiates biological mechanism from mathematical model-induced effects JM Dresch, X Liu, DN Arnosti, A Ay BMC systems biology 4, 1-11, 2010 | 62 | 2010 |
| Quantitative perturbation-based analysis of gene expression predicts enhancer activity in early Drosophila embryo R Sayal, JM Dresch, I Pushel, BR Taylor, DN Arnosti Elife 5, e08445, 2016 | 47 | 2016 |
| Two-layer mathematical modeling of gene expression: incorporating DNA-level information and system dynamics JM Dresch, MA Thompson, DN Arnosti, C Chiu SIAM Journal on Applied Mathematics 73 (2), 804-826, 2013 | 25 | 2013 |
| Deciphering the combinatorial architecture of a Drosophila homeotic gene enhancer RA Drewell, MJ Nevarez, JS Kurata, LN Winkler, L Li, JM Dresch Mechanisms of development 131, 68-77, 2014 | 23 | 2014 |
| Flanking sequence context-dependent transcription factor binding in early Drosophila development JL Stringham, AS Brown, RA Drewell, JM Dresch BMC bioinformatics 14, 1-13, 2013 | 20 | 2013 |
| A primer on thermodynamic-based models for deciphering transcriptional regulatory logic JM Dresch, M Richards, A Ay Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1829 (9), 946-953, 2013 | 13 | 2013 |
| Global parameter estimation for thermodynamic models of transcriptional regulation Y Suleimenov, A Ay, MAH Samee, JM Dresch, S Sinha, DN Arnosti Methods 62 (1), 99-108, 2013 | 13 | 2013 |
| MARZ: an algorithm to combinatorially analyze gapped n-mer models of transcription factor binding RG Zellers, RA Drewell, JM Dresch BMC bioinformatics 16, 1-14, 2015 | 11 | 2015 |
| Nucleotide Interdependency in Transcription Factor Binding Sites in the Drosophila Genome JM Dresch, RG Zellers, DK Bork, RA Drewell Gene regulation and systems biology 10, GRSB. S38462, 2016 | 10 | 2016 |
| Decoding the cis-regulatory grammar behind enhancer architecture JM Dresch, RA Drewell Unpublished book chapter, 2012 | 9 | 2012 |
| The folded k-spectrum kernel: A machine learning approach to detecting transcription factor binding sites with gapped nucleotide dependencies A Elmas, X Wang, JM Dresch Plos one 12 (10), e0185570, 2017 | 7 | 2017 |
| Transcriptome profile in Drosophila Kc and S2 embryonic cell lines D Klonaros, JM Dresch, RA Drewell G3: Genes, Genomes, Genetics 13 (5), jkad054, 2023 | 6 | 2023 |
| Global sensitivity analysis of a dynamic model for gene expression in Drosophila embryos GD McCarthy, RA Drewell, JM Dresch PeerJ 3, e1022, 2015 | 6 | 2015 |
| The Dictyostelium discoideum genome lacks significant DNA methylation and uncovers palindromic sequences as a source of false positives in bisulfite sequencing RA Drewell, TC Cormier, JL Steenwyk, JS Denis, JF Tabima, JM Dresch, ... NAR Genomics and Bioinformatics 5 (2), lqad035, 2023 | 5 | 2023 |
| Rapid and efficient purification of Drosophila homeodomain transcription factors for biophysical characterization R Orlomoski, A Bogle, J Loss, R Simons, JM Dresch, RA Drewell, ... Protein expression and purification 158, 9-14, 2019 | 5 | 2019 |
| A two-scale mathematical model for DNA transcription C Chiu, W Fakhouri, N Liu, E Dayringer, J Dresch, D Arnosti Mathematical biosciences 236 (2), 132-140, 2012 | 4 | 2012 |
| The Wisdom of Crowds: Can Mathematical Models Crack the cis Regulatory Code? JM Dresch, DN Arnosti Cell Systems 1 (6), 379-380, 2015 | 2 | 2015 |
| Analyzing the stability of gene expression using a simple reaction-diffusion model in an early Drosophila embryo GD McCarthy, RA Drewell, JM Dresch Mathematical Biosciences 316, 108239, 2019 | 1 | 2019 |
Robert A. DrewellProfessor of Biology, Clark UniversityOverená e-mailová adresa na: clarku.edu