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Ana Sofia Fernandes Oliveira
Ana Sofia Fernandes Oliveira
School of Biochemistry & Center for Computational Chemistry, University of Bristol, UK
Overená e-mailová adresa na: bristol.ac.uk - Domovská stránka
Názov
Citované v
Citované v
Rok
Hydrogenases in Desulfovibrio vulgaris Hildenborough: structural and physiologic characterisation of the membrane-bound [NiFeSe] hydrogenase
FMA Valente, ASF Oliveira, N Gnadt, I Pacheco, AV Coelho, AV Xavier, ...
JBIC Journal of Biological Inorganic Chemistry 10, 667-682, 2005
1182005
On the Use of Different Dielectric Constants for Computing Individual and Pairwise Terms in Poisson− Boltzmann Studies of Protein Ionization Equilibrium
VH Teixeira, CA Cunha, M Machuqueiro, ASF Oliveira, BL Victor, ...
The journal of physical chemistry B 109 (30), 14691-14706, 2005
1142005
# COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol
A Dommer, L Casalino, F Kearns, M Rosenfeld, N Wauer, SH Ahn, ...
The international journal of high performance computing applications 37 (1 …, 2023
802023
Conformational changes induced by ATP‐hydrolysis in an ABC transporter: A molecular dynamics study of the Sav1866 exporter
AS Oliveira, AM Baptista, CM Soares
Proteins: Structure, Function, and Bioinformatics 79 (6), 1977-1990, 2011
772011
Structural consequences of ATP hydrolysis on the ABC transporter NBD dimer: molecular dynamics studies of HlyB
JM Damas, ASF Oliveira, AM Baptista, CM Soares
Protein Science 20 (7), 1220-1230, 2011
642011
Allosteric communication in class A β-lactamases occurs via cooperative coupling of loop dynamics
I Galdadas, S Qu, Oliveira, ASF, E Olehnovics, AR Mack, MF Mojica, ...
eLife 1, 2021
602021
A potential interaction between the SARS-CoV-2 spike protein and nicotinic acetylcholine receptors
ASF Oliveira, AA Ibarra, I Bermudez, L Casalino, Z Gaieb, DK Shoemark, ...
Biophys Journal 120, 983–993, 2021
492021
Molecular dynamics simulations support the hypothesis that the brGDGT paleothermometer is based on homeoviscous adaptation
BDA Naafs, ASF Oliveira, AJ Mulholland
Geochimica et Cosmochimica Acta 312, 44-56, 2021
482021
Unlocking Nicotinic Selectivity via Direct C‒H Functionalization of (−)-Cytisine
HR Campello, SG Del Villar, A Honraedt, T Minguez, ASF Oliveira, ...
Chem, inpress, 2018
412018
Insights into the molecular mechanism of an ABC transporter: conformational changes in the NBD dimer of MJ0796
ASF Oliveira, AM Baptista, CM Soares
The Journal of Physical Chemistry B 114 (16), 5486-5496, 2010
402010
Inter-domain Communication Mechanisms in an ABC Importer: A Molecular Dynamics Study of the MalFGK2E Complex
ASF Oliveira, AM Baptista, CM Soares
PLoS computational biology 7 (8), e1002128, 2011
392011
Structural and Functional insights into the catalytic mechanism of the Type II NADH:quinone oxidoreductase family
BC Marreiros, FV Sena, FM Sousa, ASF Oliveira, CM Soares, AP Batista, ...
Scientific Reports 7 (42303), 1-13, 2017
332017
A general mechanism for signal propagation in the nicotinic acetylcholine receptor family
ASF Oliveira, CJ Edsall, CJ Woods, P Bates, GV Nunez, S Wonnacott, ...
Journal of the American Chemical Society 141 (51), 19953-19958, 2019
312019
Identification of the Initial Steps in Signal Transduction in the α4β2 Nicotinic Receptor: Insights from Equilibrium and Nonequilibrium Simulations
ASF Oliveira, DK Shoemark, HR Campello, S Wonnacott, T Gallagher, ...
Structure 27 (7), 1171-1183.e3, 2019
292019
“The key role of glutamate 172 in the mechanism of type II NADH:quinone oxidoreductase of Staphylococcus aureus
FV Sousa FM1, Sena, AP Batista, D Athayde, JA Brito, M Archer, ...
BBA-Bioenergetics. 1858, 823-832, 2017
29*2017
F.; Victor, BL; Soares, CM; Baptista, AM On the Use of Different Dielectric Constants for Computing Individual and Pairwise Terms in Poisson-Boltzmann Studies of Protein …
VH Teixeira, CA Cunha, M Machuqueiro, AS Oliveira
J. Phys. Chem. B 109 (30), 14691-14706, 2005
282005
Structural insights in cell-type specific evolution of intra-host diversity by SARS-CoV-2
K Gupta, C Toelzer, MK Williamson, DK Shoemark, ASF Oliveira, ...
Nature communications 13 (1), 222, 2022
272022
Dynamical nonequilibrium molecular dynamics reveals the structural basis for allostery and signal propagation in biomolecular systems
ASF Oliveira, G Ciccotti, S Haider, AJ Mulholland
The European Physical Journal B 94, 1-12, 2021
272021
Simulations support the interaction of the SARS-CoV-2 spike protein with nicotinic acetylcholine receptors
ASF Oliveira, AA Amaurys, I Bermudez, C Lorenzo, G Zied, DK Shoemark, ...
bioRxiv, 2020
272020
The fatty acid site is coupled to functional motifs in the SARS-CoV-2 spike protein and modulates spike allosteric behaviour
ASF Oliveira, DK Shoemark, AA Ibarra, AD Davidson, I Berger, ...
Computational and Structural Biotechnology Journal 20, 139-147, 2022
262022
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