Ferhat Ay

Citované v

	Všetky	Od 2020
Citácie	8465	5546
h-index	45	40
i10-index	70	64

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Verejný prístup

všetky položky

76 článkov

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Na základe mandátov na financovanie

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William Stafford NobleProfessor of Genome Sciences, University of WashingtonOverená e-mailová adresa na: uw.edu
Tamer KahveciProfessor of Computer Science, University of FloridaOverená e-mailová adresa na: cise.ufl.edu
Karine Le RochProfessor, University of California, RiversideOverená e-mailová adresa na: ucr.edu
Jean-Philippe VertOwkin / PSL UniversityOverená e-mailová adresa na: owkin.com
Nelle VaroquauxCNRS, Université Grenoble AlpesOverená e-mailová adresa na: univ-grenoble-alpes.fr
Evelien BunnikAssociate Professor at University of Texas Health Science Center at San AntonioOverená e-mailová adresa na: uthscsa.edu
Sushmita RoyProfessor of Biostatistics and medical informatics, University of Wisconsin-MadisonOverená e-mailová adresa na: biostat.wisc.edu
Zhijun Duan, PhDInstitute for Stem Cell & Regenerative Medicine, Division of Hematology, Department of MedicineOverená e-mailová adresa na: uw.edu
Jay ShendureProfessor of Genome Sciences, University of WashingtonOverená e-mailová adresa na: uw.edu
Wenxiu MaUniversity of California, RiversideOverená e-mailová adresa na: ucr.edu
Günhan GülsoyGoogleOverená e-mailová adresa na: google.com
Manolis KellisProfessor of Computer Science, MIT and Broad InstituteOverená e-mailová adresa na: mit.edu
Andrew HoffmanStanfordOverená e-mailová adresa na: stanford.edu
Vishnu DileepAssistant Professor, Baylor College of Medicine, Department of Molecular and Human GeneticsOverená e-mailová adresa na: bcm.edu
Sima JiaoUC BerkeleyOverená e-mailová adresa na: berkeley.edu
Timothy BaileyUniversity of Nevada, RenoOverená e-mailová adresa na: unr.edu
Daniel MarbachRoche Pharma Research and Early Development, Basel, SwitzerlandOverená e-mailová adresa na: roche.com
Thang N. DinhAssociate Professor of Computer Science, Virginia Commonwealth UniversityOverená e-mailová adresa na: vcu.edu

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Ferhat Ay

Associate Professor, La Jolla Institute for Immunology

Overená e-mailová adresa na: lji.org - Domovská stránka

Bioinformatics Computational Biology Chromatin Genomics Epigenetics


Názov Zoradiť podľa citácií Zoradiť podľa roka Zoradiť podľa názvu	Citované v Citované v	Rok
Identification of functional elements and regulatory circuits by Drosophila modENCODE S Roy, J Ernst, PV Kharchenko, P Kheradpour, N Negre, ML Eaton, ... Science 330 (6012), 1787-1797, 2010	1113	2010
Imbalance of regulatory and cytotoxic SARS-CoV-2-reactive CD4+ T cells in COVID-19 BJ Meckiff, C Ramírez-Suástegui, V Fajardo, SJ Chee, A Kusnadi, ... Cell, 2020	627*	2020
Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts F Ay, TL Bailey, WS Noble Genome research 24 (6), 999-1011, 2014	536	2014
Integrative detection and analysis of structural variation in cancer genomes JR Dixon, J Xu, V Dileep, Y Zhan, F Song, VT Le, GG Yardımcı, ... Nature genetics 50 (10), 1388-1398, 2018	353	2018
A statistical approach for inferring the 3D structure of the genome N Varoquaux, F Ay, WS Noble, JP Vert Bioinformatics 30 (12), i26-i33, 2014	291	2014
Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression F Ay, EM Bunnik, N Varoquaux, SM Bol, J Prudhomme, JP Vert, WS Noble, ... Genome research 24 (6), 974-988, 2014	257	2014
Bipartite structure of the inactive mouse X chromosome X Deng, W Ma, V Ramani, A Hill, F Yang, F Ay, JB Berletch, CA Blau, ... Genome biology 16 (1), 1-21, 2015	248	2015
Severely ill COVID-19 patients display impaired exhaustion features in SARS-CoV-2-reactive CD8+ T cells A Kusnadi, C Ramírez-Suástegui, V Fajardo, SJ Chee, BJ Meckiff, ... Science Immunology 6 (55), 2021	247*	2021
Single-cell transcriptomic analysis of tissue-resident memory T cells in human lung cancer J Clarke, B Panwar, A Madrigal, D Singh, R Gujar, O Wood, SJ Chee, ... Journal of Experimental Medicine 216 (9), 2128-2149, 2019	227	2019
Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes W Ma, F Ay, C Lee, G Gulsoy, X Deng, S Cook, J Hesson, C Cavanaugh, ... Nature Methods, 2014	221	2014
Analysis methods for studying the 3D architecture of the genome F Ay, WS Noble Genome Biology 16 (1), 1-15, 2015	196	2015
Identification of significant chromatin contacts from HiChIP data by FitHiChIP S Bhattacharyya, V Chandra, P Vijayanand, F Ay Nature communications 10 (1), 4221, 2019	189	2019
Topologically-associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication timing program V Dileep, F Ay, J Sima, DL Vera, WS Noble, DM Gilbert Genome Research, gr. 183699.114, 2015	184	2015
Measuring the reproducibility and quality of Hi-C data GG Yardımcı, H Ozadam, MEG Sauria, O Ursu, KK Yan, T Yang, ... Genome biology 20, 1-19, 2019	182	2019
Identifying cis elements for spatiotemporal control of mammalian dna replication J Sima, A Chakraborty, V Dileep, M Michalski, KN Klein, NP Holcomb, ... Cell 176 (4), 816-830. e18, 2019	182	2019
Identifying statistically significant chromatin contacts from Hi-C data with FitHiC2 A Kaul, S Bhattacharyya, F Ay Nature Protocols 15 (3), 991-1012, 2020	180	2020
Mustache: multi-scale detection of chromatin loops from Hi-C and Micro-C maps using scale-space representation A Roayaei Ardakany, HT Gezer, S Lonardi, F Ay Genome Biology 21, 2020	158	2020
Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks D Marbach, S Roy, F Ay, PE Meyer, R Candeias, T Kahveci, CA Bristow, ... Genome Research 22 (7), 1334-1349, 2012	155	2012
A predictive modeling approach for cell line-specific long-range regulatory interactions S Roy, AF Siahpirani, D Chasman, S Knaack, F Ay, R Stewart, M Wilson, ... Nucleic acids research 43 (18), 8694-8712, 2015	146	2015
Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages EM Bunnik, KB Cook, N Varoquaux, G Batugedara, J Prudhomme, A Cort, ... Nature communications 9 (1), 1910, 2018	122	2018

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