Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species JH Werren, S Richards, CA Desjardins, O Niehuis, J Gadau, ... Science 327 (5963), 343-348, 2010 | 941 | 2010 |
Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing H Lee, E Popodi, H Tang, PL Foster Proceedings of the National Academy of Sciences 109 (41), E2774-E2783, 2012 | 771 | 2012 |
A highly annotated whole-genome sequence of a Korean individual JI Kim, YS Ju, H Park, S Kim, S Lee, JH Yi, J Mudge, NA Miller, D Hong, ... nature 460 (7258), 1011-1015, 2009 | 407 | 2009 |
Antibiotic treatment enhances the genome-wide mutation rate of target cells H Long, SF Miller, C Strauss, C Zhao, L Cheng, Z Ye, K Griffin, R Te, ... Proceedings of the National Academy of Sciences 113 (18), E2498-E2505, 2016 | 229 | 2016 |
The Complete Genome Sequence of Thermococcus onnurineus NA1 Reveals a Mixed Heterotrophic and Carboxydotrophic Metabolism HS Lee, SG Kang, SS Bae, JK Lim, Y Cho, YJ Kim, JH Jeon, SS Cha, ... Journal of bacteriology 190 (22), 7491-7499, 2008 | 183 | 2008 |
Determinants of spontaneous mutation in the bacterium Escherichia coli as revealed by whole-genome sequencing PL Foster, H Lee, E Popodi, JP Townes, H Tang Proceedings of the National Academy of Sciences 112 (44), E5990-E5999, 2015 | 176 | 2015 |
Strand-biased cytosine deamination at the replication fork causes cytosine to thymine mutations in Escherichia coli AS Bhagwat, W Hao, JP Townes, H Lee, H Tang, PL Foster Proceedings of the National Academy of Sciences 113 (8), 2176-2181, 2016 | 121 | 2016 |
Insertion sequence-caused large-scale rearrangements in the genome of Escherichia coli H Lee, TG Doak, E Popodi, PL Foster, H Tang Nucleic acids research 44 (15), 7109-7119, 2016 | 110 | 2016 |
Explaining a black-box using deep variational information bottleneck approach S Bang, P Xie, H Lee, W Wu, E Xing The Thirty-Fifth AAAI Conference on Artificial Intelligence (AAAI-21), 2021 | 89 | 2021 |
Kourami: graph-guided assembly for novel human leukocyte antigen allele discovery H Lee, C Kingsford Genome biology 19, 1-16, 2018 | 82 | 2018 |
On the mutational topology of the bacterial genome PL Foster, AJ Hanson, H Lee, EM Popodi, H Tang G3: Genes, Genomes, Genetics 3 (3), 399-407, 2013 | 79 | 2013 |
Background Mutational Features of the Radiation-Resistant Bacterium Deinococcus radiodurans H Long, S Kucukyildirim, W Sung, E Williams, H Lee, M Ackerman, ... Molecular biology and evolution 32 (9), 2383-2392, 2015 | 69 | 2015 |
Adaptation of Escherichia coli to long-term serial passage in complex medium: evidence of parallel evolution KE Kram, C Geiger, WM Ismail, H Lee, H Tang, PL Foster, SE Finkel Msystems 2 (2), 10.1128/msystems. 00192-16, 2017 | 59 | 2017 |
ATM-TCR: TCR-Epitope Binding Affinity Prediction Using a Multi-Head Self-Attention Model M Cai, S Bang, P Zhang, H Lee Frontiers in immunology 13, 893247, 2022 | 50 | 2022 |
Determinants of Base-Pair Substitution Patterns Revealed by Whole-Genome Sequencing of DNA Mismatch Repair Defective Escherichia coli PL Foster, BA Niccum, E Popodi, JP Townes, H Lee, W MohammedIsmail, ... Genetics 209 (4), 1029-1042, 2018 | 43 | 2018 |
Next-generation sequencing technologies and fragment assembly algorithms H Lee, H Tang Evolutionary Genomics: Statistical and Computational Methods, Volume 1, 155-174, 2012 | 40 | 2012 |
Wastewater monitoring raises privacy and ethical considerations D Jacobs, T McDaniel, A Varsani, RU Halden, S Forrest, H Lee IEEE Transactions on Technology and Society 2 (3), 116-121, 2021 | 38 | 2021 |
The Spectrum of Replication Errors in the Absence of Error Correction Assayed Across the Whole Genome of Escherichia coli BA Niccum, H Lee, W MohammedIsmail, H Tang, PL Foster Genetics 209 (4), 1043-1054, 2018 | 30 | 2018 |
The symmetrical wave pattern of base-pair substitution rates across the Escherichia coli chromosome has multiple causes BA Niccum, H Lee, W MohammedIsmail, H Tang, PL Foster MBio 10 (4), 10.1128/mbio. 01226-19, 2019 | 29 | 2019 |
Adaptation of Escherichia coli to long-term batch culture in various rich media LL Westphal, J Lau, Z Negro, IJ Moreno, WI Mohammed, H Lee, H Tang, ... Research in Microbiology 169 (3), 145-156, 2018 | 23 | 2018 |