| Systematic and quantitative view of the antiviral arsenal of prokaryotes F Tesson, A Hervé, E Mordret, M Touchon, C d’Humières, J Cury, ... Nature communications 13 (1), 2561, 2022 | 438* | 2022 |
| Identification of protein secretion systems in bacterial genomes SS Abby, J Cury, J Guglielmini, B Néron, M Touchon, EPC Rocha Scientific reports 6 (1), 23080, 2016 | 404* | 2016 |
| The genomic diversification of the whole Acinetobacter genus: origins, mechanisms, and consequences M Touchon, J Cury, EJ Yoon, L Krizova, GC Cerqueira, C Murphy, ... Genome biology and evolution 6 (10), 2866-2882, 2014 | 297 | 2014 |
| Identification and analysis of integrons and cassette arrays in bacterial genomes J Cury, T Jové, M Touchon, B Néron, EPC Rocha Nucleic acids research 44 (10), 4539-4550, 2016 | 284 | 2016 |
| The chromosomal organization of horizontal gene transfer in bacteria PH Oliveira, M Touchon, J Cury, EPC Rocha Nature communications 8 (1), 841, 2017 | 221 | 2017 |
| Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain A Perrin, E Larsonneur, AC Nicholson, DJ Edwards, KM Gundlach, ... Nature communications 8 (1), 15483, 2017 | 171 | 2017 |
| IntegronFinder 2.0: identification and analysis of integrons across bacteria, with a focus on antibiotic resistance in Klebsiella B Néron, E Littner, M Haudiquet, A Perrin, J Cury, EPC Rocha Microorganisms 10 (4), 700, 2022 | 155 | 2022 |
| Integrative and conjugative elements and their hosts: composition, distribution and organization J Cury, M Touchon, EPC Rocha Nucleic acids research 45 (15), 8943-8956, 2017 | 141 | 2017 |
| Deep learning for population size history inference: design, comparison and combination with approximate Bayesian computation T Sanchez, J Cury, G Charpiat, F Jay Molecular Ecology Resources 21 (8), 2645-2660, 2021 | 79 | 2021 |
| Host range and genetic plasticity explain the co-existence of integrative and extrachromosomal mobile genetic elements J Cury, PH Oliveira, F de la Cruz, EPC Rocha Molecular biology and evolution 35 (9), 2230–2239, 2018 | 74 | 2018 |
| Identifying Conjugative Plasmids and Integrative Conjugative Elements with CONJscan J Cury, SS Abby, O Doppelt-Azeroual, B Néron, EPC Rocha Horizontal Gene Transfer, 265-283, 2020 | 68 | 2020 |
| A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach C d’Humières, M Touchon, S Dion, J Cury, A Ghozlane, M Garcia-Garcera, ... Scientific Reports 9 (1), 11331, 2019 | 52 | 2019 |
| Differences in integron cassette excision dynamics shape a trade-off between evolvability and genetic capacitance C Loot, A Nivina, J Cury, JA Escudero, M Ducos-Galand, D Bikard, ... MBio 8 (2), 10.1128/mbio. 02296-16, 2017 | 37 | 2017 |
| Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations ME Lauterbur, MIA Cavassim, AL Gladstein, G Gower, NS Pope, ... Elife 12, RP84874, 2023 | 29 | 2023 |
| Conservation of antiviral systems across domains of life reveals immune genes in humans J Cury, M Haudiquet, VH Trejo, E Mordret, A Hanouna, M Rotival, ... Cell Host & Microbe 32 (9), 1594-1607. e5, 2024 | 27* | 2024 |
| Intracellular positioning systems limit the entropic eviction of secondary replicons toward the nucleoid edges in bacterial cells C Planchenault, MC Pons, C Schiavon, P Siguier, J Rech, C Guynet, ... Journal of molecular biology 432 (3), 745-761, 2020 | 25 | 2020 |
| A comprehensive resource for exploring antiphage defense: DefenseFinder webservice, Wiki and databases F Tesson, R Planel, AA Egorov, H Georjon, H Vaysset, B Brancotte, ... Peer Community Journal 4, 2024 | 24 | 2024 |
| Structure-specific DNA recombination sites: Design, validation, and machine learning–based refinement A Nivina, MS Grieb, C Loot, D Bikard, J Cury, L Shehata, J Bernardes, ... Science advances 6 (30), eaay2922, 2020 | 21 | 2020 |
| Simulation of bacterial populations with SLiM J Cury, BC Haller, G Achaz, F Jay Peer community Journal 2 (e7), 2022 | 17 | 2022 |
| Integron cassettes integrate into bacterial genomes via widespread non-classical attG sites C Loot, GA Millot, E Richard, E Littner, C Vit, F Lemoine, B Néron, J Cury, ... Nature Microbiology 9 (1), 228-240, 2024 | 15* | 2024 |
Eduardo RochaCNRS, Institut PasteurOverená e-mailová adresa na: pasteur.fr
