| High-throughput functional annotation and data mining with the Blast2GO suite S Götz, JM García-Gómez, J Terol, TD Williams, SH Nagaraj, MJ Nueda, ... Nucleic acids research 36 (10), 3420-3435, 2008 | 4406 | 2008 |
| Whole–genome characterization of chemoresistant ovarian cancer AM Patch, EL Christie, D Etemadmoghadam, DW Garsed, J George, ... Nature 521 (7553), 489-494, 2015 | 1608 | 2015 |
| Development of human protein reference database as an initial platform for approaching systems biology in humans S Peri, JD Navarro, R Amanchy, TZ Kristiansen, CK Jonnalagadda, ... Genome research 13 (10), 2363-2371, 2003 | 1353 | 2003 |
| Whole-genome landscape of pancreatic neuroendocrine tumours A Scarpa, DK Chang, K Nones, V Corbo, AM Patch, P Bailey, RT Lawlor, ... Nature 543 (7643), 65-71, 2017 | 942 | 2017 |
| Human protein reference database as a discovery resource for proteomics S Peri, JD Navarro, TZ Kristiansen, R Amanchy, V Surendranath, ... Nucleic acids research 32 (suppl_1), D497-D501, 2004 | 718 | 2004 |
| A hitchhiker's guide to expressed sequence tag (EST) analysis SH Nagaraj, RB Gasser, S Ranganathan Briefings in bioinformatics 8 (1), 6-21, 2007 | 417 | 2007 |
| Proteomics analysis of the excretory/secretory component of the blood-feeding stage of the hookworm, Ancylostoma caninum J Mulvenna, B Hamilton, SH Nagaraj, D Smyth, A Loukas, JJ Gorman Molecular & Cellular Proteomics 8 (1), 109-121, 2009 | 220 | 2009 |
| Association weight matrix for the genetic dissection of puberty in beef cattle MRS Fortes, A Reverter, Y Zhang, E Collis, SH Nagaraj, NN Jonsson, ... Proceedings of the National Academy of Sciences 107 (31), 13642-13647, 2010 | 189 | 2010 |
| Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data A Reverter, NJ Hudson, SH Nagaraj, M Pérez-Enciso, BP Dalrymple Bioinformatics 26 (7), 896-904, 2010 | 179 | 2010 |
| Plasma Proteome Database as a resource for proteomics research B Muthusamy, G Hanumanthu, S Suresh, B Rekha, D Srinivas, L Karthick, ... Proteomics 5 (13), 3531-3536, 2005 | 174 | 2005 |
| A single nucleotide polymorphism-derived regulatory gene network underlying puberty in 2 tropical breeds of beef cattle MRS Fortes, A Reverter, SH Nagaraj, Y Zhang, NN Jonsson, W Barris, ... Journal of Animal Science 89 (6), 1669-1683, 2011 | 139 | 2011 |
| Targeting DNA damage response and replication stress in pancreatic cancer SB Dreyer, R Upstill-Goddard, V Paulus-Hock, C Paris, EM Lampraki, ... Gastroenterology 160 (1), 362-377. e13, 2021 | 129 | 2021 |
| HNF4A and GATA6 loss reveals therapeutically actionable subtypes in pancreatic cancer H Brunton, G Caligiuri, R Cunningham, R Upstill-Goddard, UM Bailey, ... Cell reports 31 (6), 2020 | 113 | 2020 |
| The evolution of tropical adaptation: comparing taurine and zebu cattle EKF Chan, SH Nagaraj, A Reverter Animal Genetics 41 (5), 467-477, 2010 | 112 | 2010 |
| Transcriptional Changes in the Hookworm, Ancylostoma caninum, during the Transition from a Free-Living to a Parasitic Larva BJD Datu, RB Gasser, SH Nagaraj, EK Ong, P O'Donoghue, R McInnes, ... PLoS neglected tropical diseases 2 (1), e130, 2008 | 92 | 2008 |
| ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform SH Nagaraj, N Deshpande, RB Gasser, S Ranganathan Nucleic Acids Research 35 (suppl_2), W143-W147, 2007 | 87 | 2007 |
| Gene network analyses of first service conception in Brangus heifers: use of genome and trait associations, hypothalamic-transcriptome information, and transcription factors MRS Fortes, WM Snelling, A Reverter, SH Nagaraj, SA Lehnert, ... Journal of Animal Science 90 (9), 2894-2906, 2012 | 82 | 2012 |
| A comparative study of multi-omics integration tools for cancer driver gene identification and tumour subtyping A Sathyanarayanan, R Gupta, EW Thompson, DR Nyholt, DC Bauer, ... Briefings in bioinformatics 21 (6), 1920-1936, 2020 | 72 | 2020 |
| PGTools: a software suite for proteogenomic data analysis and visualization SH Nagaraj, N Waddell, AK Madugundu, S Wood, A Jones, RA Mandyam, ... Journal of proteome research 14 (5), 2255-2266, 2015 | 70 | 2015 |
| A Boolean-based systems biology approach to predict novel genes associated with cancer: Application to colorectal cancer SH Nagaraj, A Reverter BMC systems biology 5, 1-15, 2011 | 70 | 2011 |