David H. Mathews

Citované v

	Všetky	Od 2020
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Verejný prístup

všetky položky

105 článkov

10 článkov

dostupné

nedostupné

Na základe mandátov na financovanie

Spoluautori

Michael ZukerRensselaer Polytechnic InstituteOverená e-mailová adresa na: alum.mit.edu
Ross C WalkerOverená e-mailová adresa na: sdsc.edu
David A CaseRutgers UniversityOverená e-mailová adresa na: biomaps.rutgers.edu
Stanislav BellaousovUniversity of RochesterOverená e-mailová adresa na: urmc.rochester.edu
Liang HuangProfessor of Computer Science and (by courtesy) Biochemistry/Biophysics, Oregon State UniversityOverená e-mailová adresa na: oregonstate.edu
Kevin M WeeksKenan Distinguished Professor, University of North Carolina - Chapel HillOverená e-mailová adresa na: unc.edu
He ZhangRaina Biosciences, Baidu Research USA (previously), Oregon State University (previously)Overená e-mailová adresa na: rainabio.com
Gaurav SharmaUniversity of RochesterOverená e-mailová adresa na: rochester.edu
Joseph WedekindUniversity of Rochester School of Medicine and DentistryOverená e-mailová adresa na: rochester.edu
Zhi John LuAssociate Professor, Tsinghua UniversityOverená e-mailová adresa na: tsinghua.edu.cn
Zhenjiang Zech Xustate key lab of food science and resources, nuOverená e-mailová adresa na: ucsd.edu
Liang ZhangZhejiang Cancer Hospital, Hangzhou Institute of Medicine (HIM), Chinese Academy of SciencesOverená e-mailová adresa na: him.cas.cn
Arif Ozgun HarmanciUniversity of Texas Health Science Center at HoustonOverená e-mailová adresa na: harmancilab.org
Chapin E. CavenderOpen Force Field Initiative, University of California San Diego, Skaggs School of PharmacyOverená e-mailová adresa na: health.ucsd.edu
Zhen TanYale UniversityOverená e-mailová adresa na: yale.edu
Aleksandar SpasicWuXi AppTec, Natick, MAOverená e-mailová adresa na: wuxiapptec.com
Xiaoju ZhangMETiS TherapeuticsOverená e-mailová adresa na: metispharma.com
Philip BevilacquaProfessor of Chemistry, The Pennsylvania State UniversityOverená e-mailová adresa na: psu.edu
Alan GrossfieldBiochemistry and Biophysics, University of Rochester Medical CenterOverená e-mailová adresa na: urmc.rochester.edu
Hongying SunUniversity of RochesterOverená e-mailová adresa na: rochester.edu

Sledovať

David H. Mathews

Department of Biochemistry and Biophysics, University of Rochester Medical Center

Overená e-mailová adresa na: urmc.rochester.edu - Domovská stránka

Computational Biology RNA RNA Biology


Názov Zoradiť podľa citácií Zoradiť podľa roka Zoradiť podľa názvu	Citované v Citované v	Rok
Amber 10 DA Case, TA Darden, TE Cheatham, CL Simmerling, J Wang, RE Duke, ... University of California, 2008	12284*	2008
Amber 2023 DA Case, HM Aktulga, K Belfon, IY Ben-Shalom, JT Berryman, SR Brozell, ... University of California, San Francisco, 2023	5976	2023
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure DH Mathews, J Sabina, M Zuker, DH Turner Journal of molecular biology 288 (5), 911-940, 1999	4853	1999
RNAstructure: software for RNA secondary structure prediction and analysis JS Reuter, DH Mathews BMC bioinformatics 11, 1-9, 2010	2127	2010
Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure DH Mathews, MD Disney, JL Childs, SJ Schroeder, M Zuker, DH Turner Proceedings of the National Academy of Sciences 101 (19), 7287-7292, 2004	1910	2004
Algorithms and thermodynamics for RNA secondary structure prediction: a practical guide M Zuker, DH Mathews, DH Turner RNA biochemistry and biotechnology, 11-43, 1999	1451	1999
Accurate SHAPE-directed RNA structure determination KE Deigan, TW Li, DH Mathews, KM Weeks Proceedings of the National Academy of Sciences 106 (1), 97-102, 2009	805	2009
NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure DH Turner, DH Mathews Nucleic acids research 38 (suppl_1), D280-D282, 2010	666	2010
Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding. AE Walter, DH Turner, J Kim, MH Lyttle, P Müller, DH Mathews, M Zuker Proceedings of the National Academy of Sciences 91 (20), 9218-9222, 1994	642	1994
Prediction of RNA secondary structure by free energy minimization DH Mathews, DH Turner Current opinion in structural biology 16 (3), 270-278, 2006	535	2006
Dynalign: an algorithm for finding the secondary structure common to two RNA sequences DH Mathews, DH Turner Journal of molecular biology 317 (2), 191-203, 2002	534	2002
High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states KA Wilkinson, RJ Gorelick, SM Vasa, N Guex, A Rein, DH Mathews, ... PLoS biology 6 (4), e96, 2008	484	2008
Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization DH Mathews Rna 10 (8), 1178-1190, 2004	470	2004
RNAstructure: web servers for RNA secondary structure prediction and analysis S Bellaousov, JS Reuter, MG Seetin, DH Mathews Nucleic acids research 41 (W1), W471-W474, 2013	440	2013
FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing JG Underwood, AV Uzilov, S Katzman, CS Onodera, JE Mainzer, ... Nature methods 7 (12), 995-1001, 2010	394	2010
Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknots CE Hajdin, S Bellaousov, W Huggins, CW Leonard, DH Mathews, ... Proceedings of the National Academy of Sciences 110 (14), 5498-5503, 2013	363	2013
Predicting oligonucleotide affinity to nucleic acid targets DH Mathews, ME Burkard, SM Freier, JR Wyatt, DH Turner Rna 5 (11), 1458-1469, 1999	317	1999
Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change AV Uzilov, JM Keegan, DH Mathews BMC bioinformatics 7, 1-30, 2006	288	2006
Revolutions in RNA secondary structure prediction DH Mathews Journal of molecular biology 359 (3), 526-532, 2006	275	2006
Improved RNA secondary structure prediction by maximizing expected pair accuracy ZJ Lu, JW Gloor, DH Mathews Rna 15 (10), 1805-1813, 2009	270	2009

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