| Amber 2023 DA Case, HM Aktulga, K Belfon, IY Ben-Shalom, JT Berryman, SR Brozell, ... University of California, San Francisco, 2023 | 5941 | 2023 |
| AmberTools DA Case, HM Aktulga, K Belfon, DS Cerutti, GA Cisneros, VWD Cruzeiro, ... Journal of chemical information and modeling 63 (20), 6183-6191, 2023 | 605 | 2023 |
| Recent developments and applications of the MMPBSA method C Wang, DA Greene, L Xiao, R Qi, R Luo Frontiers in molecular biosciences 4, 87, 2018 | 547 | 2018 |
| AMBER 2018; 2018 DA Case, IY Ben-Shalom, SR Brozell, DS Cerutti, TE Cheatham III, ... University of California, San Francisco, 2018 | 123 | 2018 |
| Replica exchange molecular dynamics: a practical application protocol with solutions to common problems and a peptide aggregation and self-assembly example R Qi, G Wei, B Ma, R Nussinov Peptide self-assembly: Methods and protocols, 101-119, 2018 | 110 | 2018 |
| Expanding the nanoarchitectural diversity through aromatic di-and tri-peptide coassembly: Nanostructures and molecular mechanisms C Guo, ZA Arnon, R Qi, Q Zhang, L Adler-Abramovich, E Gazit, G Wei ACS nano 10 (9), 8316-8324, 2016 | 102 | 2016 |
| Conformational distribution and α-helix to β-sheet transition of human amylin fragment dimer R Qi, Y Luo, B Ma, R Nussinov, G Wei Biomacromolecules 15 (1), 122-131, 2014 | 92 | 2014 |
| Regulation of the Hippo pathway by phosphatidic acid-mediated lipid-protein interaction H Han, R Qi, JJ Zhou, AP Ta, B Yang, HJ Nakaoka, G Seo, KL Guan, ... Molecular cell 72 (2), 328-340. e8, 2018 | 87 | 2018 |
| AMBER 22 reference manual DA Case, RE Duke, RC Walker, NR Skrynnikov, TE Cheatham III, ... University of California, San Francisco, United States-California, 2022 | 55 | 2022 |
| Aβ “stretching-and-packing” cross-seeding mechanism can trigger tau protein aggregation R Qi, Y Luo, G Wei, R Nussinov, B Ma The Journal of Physical Chemistry Letters 6 (16), 3276-3282, 2015 | 54 | 2015 |
| AMBER 2018 TA Darden, RE Duke, D Ghoreishi, MK Gilson, H Gohlke, AW Goetz, ... University of California, San Francisco, 2018 | 52 | 2018 |
| The Hippo pathway kinases LATS1 and LATS2 attenuate cellular responses to heavy metals through phosphorylating MTF1 H Han, HJ Nakaoka, L Hofmann, JJ Zhou, C Yu, L Zeng, J Nan, G Seo, ... Nature cell biology 24 (1), 74-87, 2022 | 41 | 2022 |
| Amber 2020, 2020 DA Case, K Belfon, IY Ben-Shalom, SR Brozell, DS Cerutti, T Cheatham, ... San Francisco: University of California.[Academic Search], 2019 | 40 | 2019 |
| Heterogeneous dielectric implicit membrane model for the calculation of MMPBSA binding free energies DA Greene, R Qi, R Nguyen, T Qiu, R Luo Journal of chemical information and modeling 59 (6), 3041-3056, 2019 | 35 | 2019 |
| Conformational stability and dynamics of the cancer-associated isoform Δ133p53β are modulated by p53 peptides and p53-specific DNA J Lei, R Qi, Y Tang, W Wang, G Wei, R Nussinov, B Ma The FASEB Journal 33 (3), 4225, 2019 | 35 | 2019 |
| Interaction Dynamics in inhibiting the aggregation of Aβ peptides by SWCNTs: a combined experimental and coarse-grained molecular dynamic simulation study D Lin, R Qi, S Li, R He, P Li, G Wei, X Yang ACS Chemical Neuroscience 7 (9), 1232-1240, 2016 | 29 | 2016 |
| Self-aggregation and coaggregation of the p53 core fragment with its aggregation gatekeeper variant J Lei, R Qi, G Wei, R Nussinov, B Ma Physical Chemistry Chemical Physics 18 (11), 8098-8107, 2016 | 29 | 2016 |
| AMBER16 and AmberTools17 DA Case, DS Cerutti, TE Cheatham, TA Darden, RE Duke, TJ Giese, ... University of California, San Francisco, 2017 | 28 | 2017 |
| Kollman DA Case, TA Darden, TE Cheatham III, CL Simmerling, J Wang, RE Duke, ... PA, AMBER 8, 2023 | 26 | 2023 |
| Efficient formulation of polarizable Gaussian multipole electrostatics for biomolecular simulations H Wei, R Qi, J Wang, P Cieplak, Y Duan, R Luo The Journal of chemical physics 153 (11), 2020 | 24 | 2020 |
Guanghong WeiDepartment of Physics, Fudan UniversityOverená e-mailová adresa na: fudan.edu.cn