Linking engineered cells to their digital twins: a version control system for strain engineering J Tellechea-Luzardo, C Winterhalter, P Widera, J Kozyra, V de Lorenzo, ... ACS synthetic biology 9 (3), 536-545, 2020 | 29 | 2020 |
Designing Uniquely Addressable Bio-orthogonal Synthetic Scaffolds for DNA and RNA Origami J Kozyra, A Ceccarelli, E Torelli, A Lopiccolo, JY Gu, H Fellermann, ... ACS Synthetic Biology, 2017 | 26 | 2017 |
Isothermal folding of a light-up bio-orthogonal RNA origami nanoribbon E Torelli, JW Kozyra, JY Gu, U Stimming, L Piantanida, K Voïtchovsky, ... Scientific Reports 8 (1), 6989, 2018 | 24 | 2018 |
Cotranscriptional folding of a bio-orthogonal fluorescent scaffolded RNA origami E Torelli, J Kozyra, B Shirt-Ediss, L Piantanida, K Voïtchovsky, ... ACS Synthetic Biology 9 (7), 1682-1692, 2020 | 15 | 2020 |
Design of experiments and the virtual PCR simulator: An online game for pharmaceutical scientists and biotechnologists H Fellermann, B Shirt‐Ediss, J Kozyra, M Linsley, D Lendrem, J Isaacs, ... Pharmaceutical statistics 18 (4), 402, 2019 | 15 | 2019 |
The PCR Simulator: an on-line application for teaching Design of Experiments and the polymerase chain reaction H Fellermann, B Shirt-Ediss, JW Koryza, M Linsley, DW Lendrem, ... bioRxiv, 415042, 2018 | 5 | 2018 |
In Vitro Implementation of a Stack Data Structure Based on DNA Strand Displacement H Fellermann, A Lopiccolo, J Kozyra, N Krasnogor Unconventional Computing and Natural Computing, 2016 | 4 | 2016 |
Optimizing nucleic acid sequences for a molecular data recorder J Kozyra, H Fellermann, B Shirt-Ediss, A Lopiccolo, N Krasnogor Proceedings of the Genetic and Evolutionary Computation Conference, 1145-1152, 2017 | 3 | 2017 |
Linking engineered cells to their digital twins: a version control system for strain engineering JT Luzardo, C Winterhalter, P Widera, J Kozyra, V de Lorenzo, ... bioRxiv, 786111, 2019 | 2 | 2019 |
Predicting DNA toehold-mediated strand displacement rate constants using a DNA-BERT transformer deep learning model A Akay, HN Reddy, R Galloway, J Kozyra, AW Jackson Heliyon 10 (7), 2024 | 1 | 2024 |
Towards in vivo origami: bio-orthogonal scaffolded RNA nanoribbons self-assembled via co-transcriptional folding E Torelli, JW Kozyra, B Shirt-Ediss, L Piantanida, K Voïtchovsky, ... The 1st International Biodesign Research Conference, 2020 | | 2020 |
Towards in vivo origami: co-transcriptional folding of a bio-orthogonal scaffolded RNA nanoribbon E Torelli, JW Kozyra, B Shirt-Ediss, L Piantanida, K Voïtchovsky, ... Functional DNA Nanotechnology, FDN 2020, 2020 | | 2020 |
Switchable 2D/3D DNA origami nanodevices and light-up bio-orthogonal RNA nanoribbon E Torelli, JW Kozyra, JY Gu, U Stimming, L Piantanida, K Voïtchovsky, ... Nantech 2019, 2019 | | 2019 |
Walk on the Origami Side: From Switchable DNA Nanodevices to Light-up Bio-orthogonal RNA Nanoribbon E Torelli, JW Kozyra, JY Gu, U Stimming, L Piantanida, K Voïtchovsky, ... 2019 RNA Nanotechnologies, New Frontiers in RNA Nanotechnology-Based …, 2019 | | 2019 |
Toward in vivo nanostructures: hybrid origami scaffolds on De Bruijn sequence J Kozyra, A Ceccarelli, E Torelli, A Lopiccolo, H Fellermann, B Shirt-Ediss, ... BioOrigami Workshop, 2017 | | 2017 |
Computation and programmability at the nano-bio interface JW Kozyra Newcastle University, 2017 | | 2017 |