MVGCN: data integration through multi-view graph convolutional network for predicting links in biomedical bipartite networks H Fu, F Huang, X Liu, Y Qiu, W Zhang Bioinformatics 38 (2), 426-434, 2022 | 98 | 2022 |
GraphCDR: a graph neural network method with contrastive learning for cancer drug response prediction X Liu, C Song, F Huang, H Fu, W Xiao, W Zhang Briefings in Bioinformatics 23 (1), bbab457, 2022 | 86 | 2022 |
Multi-way relation-enhanced hypergraph representation learning for anti-cancer drug synergy prediction X Liu, C Song, S Liu, M Li, X Zhou, W Zhang Bioinformatics 38 (20), 4782-4789, 2022 | 46 | 2022 |
Multi-relational contrastive learning graph neural network for drug-drug interaction event prediction Z Xiong, S Liu, F Huang, Z Wang, X Liu, Z Zhang, W Zhang Proceedings of the AAAI Conference on Artificial Intelligence 37 (4), 5339-5347, 2023 | 29 | 2023 |
SGNNMD: signed graph neural network for predicting deregulation types of miRNA-disease associations G Zhang, M Li, H Deng, X Xu, X Liu, W Zhang Briefings in bioinformatics 23 (1), bbab464, 2022 | 22 | 2022 |
A subcomponent-guided deep learning method for interpretable cancer drug response prediction X Liu, W Zhang PLOS Computational Biology 19 (8), e1011382, 2023 | 18 | 2023 |
Multi-view contrastive learning hypergraph neural network for drug-microbe-disease association prediction L Liu, F Huang, X Liu, Z Xiong, M Li, C Song, W Zhang Proceedings of the Thirty-Second International Joint Conference on …, 2023 | 14 | 2023 |
A multi-modal contrastive diffusion model for therapeutic peptide generation Y Wang, X Liu, F Huang, Z Xiong, W Zhang Proceedings of the AAAI Conference on Artificial Intelligence 38 (1), 3-11, 2024 | 11 | 2024 |
Subgraph-aware graph kernel neural network for link prediction in biological networks M Li, Z Wang, L Liu, X Liu, W Zhang IEEE Journal of Biomedical and Health Informatics, 2024 | 9 | 2024 |
ADEIP: an integrated platform of age-dependent expression and immune profiles across human tissues X Liu, W Chen, Y Fang, S Yang, L Chang, X Chen, H Ye, X Tang, S Zhong, ... Briefings in bioinformatics 22 (6), bbab274, 2021 | 9 | 2021 |
ZeroDDI: A Zero-Shot Drug-Drug Interaction Event Prediction Method with Semantic Enhanced Learning and Dual-Modal Uniform Alignment Z Wang, Z Xiong, F Huang, X Liu, W Zhang arXiv preprint arXiv:2407.00891, 2024 | 2 | 2024 |
Predicting drug transcriptional response similarity using Signed Graph Convolutional Network Z Wang, C Hong, X Liu, Z Xiong, F Liu, W Zhang 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2022 | | 2022 |