| Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020 | 2526* | 2020 |
| Inferring ancient divergences requires genes with strong phylogenetic signals L Salichos, A Rokas Nature 497 (7449), 327-331, 2013 | 652 | 2013 |
| The real cost of sequencing: scaling computation to keep pace with data generation P Muir, S Li, S Lou, D Wang, DJ Spakowicz, L Salichos, J Zhang, ... Genome biology 17, 1-9, 2016 | 523 | 2016 |
| Novel information theory-based measures for quantifying incongruence among phylogenetic trees L Salichos, A Stamatakis, A Rokas Molecular biology and evolution 31 (5), 1261-1271, 2014 | 280 | 2014 |
| The evolutionary imprint of domestication on genome variation and function of the filamentous fungus Aspergillus oryzae JG Gibbons, L Salichos, JC Slot, DC Rinker, KL McGary, JG King, ... Current Biology 22 (15), 1403-1409, 2012 | 207 | 2012 |
| Passenger mutations in more than 2,500 cancer genomes: overall molecular functional impact and consequences S Kumar, J Warrell, S Li, PD McGillivray, W Meyerson, L Salichos, ... Cell 180 (5), 915-927. e16, 2020 | 139 | 2020 |
| Transcriptome-wide analysis of small RNA expression in early zebrafish development C Wei, L Salichos, CM Wittgrove, A Rokas, JG Patton Rna 18 (5), 915-929, 2012 | 123 | 2012 |
| Complete Bacteriophage Transfer in a Bacterial Endosymbiont (Wolbachia) Determined by Targeted Genome Capture BN Kent, L Salichos, JG Gibbons, A Rokas, ILG Newton, ME Clark, ... Genome biology and evolution 3, 209-218, 2011 | 112 | 2011 |
| Evaluating ortholog prediction algorithms in a yeast model clade L Salichos, A Rokas PloS one 6 (4), e18755, 2011 | 102 | 2011 |
| The diversity and evolution of circadian clock proteins in fungi L Salichos, A Rokas Mycologia 102 (2), 269-278, 2010 | 86 | 2010 |
| A genome-scale investigation of how sequence, function, and tree-based gene properties influence phylogenetic inference XX Shen, L Salichos, A Rokas Genome Biology and Evolution 8 (8), 2565-2580, 2016 | 85 | 2016 |
| Computing the internode certainty and related measures from partial gene trees K Kobert, L Salichos, A Rokas, A Stamatakis Molecular Biology and Evolution 33 (6), 1606-1617, 2016 | 81 | 2016 |
| The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models J Rozowsky, J Gao, B Borsari, YT Yang, T Galeev, G Gürsoy, CB Epstein, ... Cell 186 (7), 1493-1511. e40, 2023 | 45 | 2023 |
| Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples MH Bailey, WU Meyerson, LJ Dursi, LB Wang, G Dong, WW Liang, ... Nature communications 11 (1), 4748, 2020 | 45 | 2020 |
| Combined burden and functional impact tests for cancer driver discovery using DriverPower S Shuai, S Gallinger, LD Stein Nature communications 11 (1), 734, 2020 | 43 | 2020 |
| Alpha, Beta, gamma human PapillomaViruses (HPV) detection with a different sets of primers in oropharyngeal swabs, anal and cervical samples C Sias, L Salichos, D Lapa, F Del Nonno, A Baiocchini, MR Capobianchi, ... Virology journal 16, 1-10, 2019 | 29 | 2019 |
| Estimating growth patterns and driver effects in tumor evolution from individual samples L Salichos, W Meyerson, J Warrell, M Gerstein Nature communications 11 (1), 732, 2020 | 27 | 2020 |
| Proteome-wide screening for mitogen-activated protein kinase docking motifs and interactors G Shi, C Song, J Torres Robles, L Salichos, HJ Lou, TKT Lam, M Gerstein, ... Science signaling 16 (767), eabm5518, 2023 | 19 | 2023 |
| Impact of viral selected mutations on T cell mediated immunity in chronically evolving and self limiting acute HCV infection S Guglietta, AR Garbuglia, L Salichos, L Ruggeri, A Folgori, MP Perrone, ... Virology 386 (2), 398-406, 2009 | 18 | 2009 |
| Identification of the miRNAome in human fracture callus and nonunion tissues M Hadjiargyrou, L Salichos, P Kloen Journal of Orthopaedic Translation 39, 113-123, 2023 | 7 | 2023 |
