| Convolutional neural network-based annotation of bacterial type IV secretion system effectors with enhanced accuracy and reduced false discovery J Hong, Y Luo, M Mou, J Fu, Y Zhang, W Xue, T Xie, L Tao, Y Lou, F Zhu Briefings in bioinformatics 21 (5), 1825-1836, 2020 | 109 | 2020 |
| MMEASE: online meta-analysis of metabolomic data by enhanced metabolite annotation, marker selection and enrichment analysis Q Yang, B Li, S Chen, J Tang, Y Li, Y Li, S Zhang, C Shi, Y Zhang, M Mou, ... Journal of Proteomics 232, 104023, 2021 | 104 | 2021 |
| INTEDE: interactome of drug-metabolizing enzymes J Yin, F Li, Y Zhou, M Mou, Y Lu, K Chen, J Xue, Y Luo, J Fu, X He, J Gao, ... Nucleic Acids Research 49 (D1), D1233-D1243, 2021 | 90 | 2021 |
| MetaFS: performance assessment of biomarker discovery in metaproteomics J Tang, M Mou, Y Wang, Y Luo, F Zhu Briefings in Bioinformatics 22 (3), bbaa105, 2021 | 83 | 2021 |
| DrugMAP: molecular atlas and pharma-information of all drugs F Li, J Yin, M Lu, M Mou, Z Li, Z Zeng, Y Tan, S Wang, X Chu, H Dai, ... Nucleic acids research 51 (D1), D1288-D1299, 2023 | 74 | 2023 |
| Artificial intelligence in pharmaceutical sciences M Lu, J Yin, Q Zhu, G Lin, M Mou, F Liu, Z Pan, N You, X Lian, F Li, ... Engineering 27, 37-69, 2023 | 64 | 2023 |
| A transformer-based ensemble framework for the prediction of protein–protein interaction sites M Mou, Z Pan, Z Zhou, L Zheng, H Zhang, S Shi, F Li, X Sun, F Zhu Research 6, 0240, 2023 | 59 | 2023 |
| DRESIS: the first comprehensive landscape of drug resistance information X Sun, Y Zhang, H Li, Y Zhou, S Shi, Z Chen, X He, H Zhang, F Li, J Yin, ... Nucleic acids research 51 (D1), D1263-D1275, 2023 | 57 | 2023 |
| TheMarker: a comprehensive database of therapeutic biomarkers Y Zhang, Y Zhou, Y Zhou, X Yu, X Shen, Y Hong, Y Zhang, S Wang, ... Nucleic Acids Research 52 (D1), D1450-D1464, 2024 | 42 | 2024 |
| AnnoPRO: a strategy for protein function annotation based on multi-scale protein representation and a hybrid deep learning of dual-path encoding L Zheng, S Shi, M Lu, P Fang, Z Pan, H Zhang, Z Zhou, H Zhang, M Mou, ... Genome biology 25 (1), 41, 2024 | 35 | 2024 |
| A task-specific encoding algorithm for RNAs and RNA-associated interactions based on convolutional autoencoder Y Wang, Z Pan, M Mou, W Xia, H Zhang, H Zhang, J Liu, L Zheng, Y Luo, ... Nucleic acids research 51 (21), e110-e110, 2023 | 35 | 2023 |
| Application of machine learning in spatial proteomics M Mou, Z Pan, M Lu, H Sun, Y Wang, Y Luo, F Zhu Journal of Chemical Information and Modeling 62 (23), 5875-5895, 2022 | 32 | 2022 |
| GIMICA: host genetic and immune factors shaping human microbiota J Tang, X Wu, M Mou, C Wang, L Wang, F Li, M Guo, J Yin, W Xie, ... Nucleic Acids Research 49 (D1), D715-D722, 2021 | 32 | 2021 |
| ncRNAInter: a novel strategy based on graph neural network to discover interactions between lncRNA and miRNA H Zhang, Y Wang, Z Pan, X Sun, M Mou, B Zhang, Z Li, H Li, F Zhu Briefings in bioinformatics 23 (6), bbac411, 2022 | 30 | 2022 |
| Advances in current diabetes proteomics: from the perspectives of label-free quantification and biomarker selection J Fu, Y Luo, M Mou, H Zhang, J Tang, Y Wang, F Zhu Current Drug Targets 21 (1), 34-54, 2020 | 15 | 2020 |
| Biological activities of drug inactive ingredients C Zhang, M Mou, Y Zhou, W Zhang, X Lian, S Shi, M Lu, H Sun, F Li, ... Briefings in Bioinformatics 23 (5), bbac160, 2022 | 13 | 2022 |
| REGLIV: molecular regulation data of diverse living systems facilitating current multiomics research S Zhang, X Sun, M Mou, K Amahong, H Sun, W Zhang, S Shi, Z Li, J Gao, ... Computers in Biology and Medicine 148, 105825, 2022 | 12 | 2022 |
| A novel strategy for designing the magic shotguns for distantly related target pairs Y Luo, P Wang, M Mou, H Zheng, J Hong, L Tao, F Zhu Briefings in Bioinformatics 24 (1), bbac621, 2023 | 11 | 2023 |
| CellSTAR: a comprehensive resource for single-cell transcriptomic annotation Y Zhang, H Sun, W Zhang, T Fu, S Huang, M Mou, J Zhang, J Gao, Y Ge, ... Nucleic acids research 52 (D1), D859-D870, 2024 | 10 | 2024 |
| Decoding drug response with structurized gridding map-based cell representation J Yin, H Zhang, X Sun, N You, M Mou, M Lu, Z Pan, F Li, H Li, S Zeng, ... IEEE Journal of Biomedical and Health Informatics, 2023 | 9 | 2023 |