David R Kelley

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Steven SalzbergBloomberg Distinguished Professor, Johns Hopkins UniversityPreverjeni e-poštni naslov na jhu.edu
Cole TrapnellAssociate Professor, Dept. of Genome Sciences, University of WashingtonPreverjeni e-poštni naslov na uw.edu
David Gillis HendricksonPreverjeni e-poštni naslov na calicolabs.com
Loyal A. GoffJohns Hopkins Institute of Genetic MedicinePreverjeni e-poštni naslov na jhmi.edu
Geo PerteaData/Software Engineer, Lieber Institute for Brain DevelopmentPreverjeni e-poštni naslov na jhu.edu
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityPreverjeni e-poštni naslov na cs.jhu.edu
Lior PachterBren Professor of Computational Biology, CaltechPreverjeni e-poštni naslov na caltech.edu
Adam RobertsGoogle DeepMindPreverjeni e-poštni naslov na google.com
Daehwan KimOmphalos Lifesciences IncPreverjeni e-poštni naslov na omphaloslifesci.com
James YorkeDist. Univ. Research Prof of Math and Physics, Univ. of MarylandPreverjeni e-poštni naslov na umd.edu
Aleksey V ZiminResearch Scientist, Department of Biomedical Engineering, Johns Hopkins UnviersityPreverjeni e-poštni naslov na jhu.edu
Martin SauvageauAssistant Professor, Montreal Clinical Research Institute - IRCMPreverjeni e-poštni naslov na ircm.qc.ca
Ezgi HacisuleymanPostdoctoral fellow at Rockefeller UniversityPreverjeni e-poštni naslov na mail.rockefeller.edu
Mihai PopProfessor of Computer Science, University of Maryland, College ParkPreverjeni e-poštni naslov na umd.edu
Daniel D SommerNational Biodefense Analysis and Countermeasures CenterPreverjeni e-poštni naslov na nbacc.dhs.gov
Carl KingsfordProfessor, Computational Biology Department, School of Computer Science, CarnegiePreverjeni e-poštni naslov na cs.cmu.edu
Bo LiuEngineering Manager of Data Infrastructure, Square

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David R Kelley

Calico Labs

Preverjeni e-poštni naslov na calicolabs.com - Domača stran

Computational Biology


Naslov Razvrsti po navedbah Razvrsti po letniku Razvrsti po naslovu	Navedeno Navedeno	Leto
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks C Trapnell, A Roberts, L Goff, G Pertea, D Kim, DR Kelley, H Pimentel, ... Nature Protocols 7 (3), 562-578, 2012	13302	2012
A whole-genome assembly of the domestic cow, Bos taurus AV Zimin, AL Delcher, L Florea, DR Kelley, MC Schatz, D Puiu, ... Genome biology 10, 1-10, 2009	1376	2009
Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks DR Kelley, J Snoek, JL Rinn Genome research 26 (7), 990-999, 2016	1104	2016
Effective gene expression prediction from sequence by integrating long-range interactions Ž Avsec, V Agarwal, D Visentin, JR Ledsam, A Grabska-Barwinska, ... Nature methods 18 (10), 1196-1203, 2021	868	2021
Quake: quality-aware detection and correction of sequencing errors DR Kelley, MC Schatz, SL Salzberg Genome Biology 11 (11), R116, 2010	743	2010
Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre E Hacisuleyman, LA Goff, C Trapnell, A Williams, J Henao-Mejia, L Sun, ... Nature structural & molecular biology 21 (2), 198-206, 2014	716	2014
Assemblathon 1: A competitive assessment of de novo short read assembly methods DA Earl, K Bradnam, JS John, A Darling, D Lin, J Faas, HOK Yu, B Vince, ... Genome Research, 2011	633	2011
Transposable elements reveal a stem cell specific class of long noncoding RNAs DR Kelley, JL Rinn Genome Biology 13 (11), R107, 2012	622	2012
Sequential regulatory activity prediction across chromosomes with convolutional neural networks DR Kelley, YA Reshef, M Bileschi, D Belanger, CY McLean, J Snoek Genome research 28 (5), 739-750, 2018	512	2018
Transcriptional and epigenetic dynamics during specification of human embryonic stem cells CA Gifford, MJ Ziller, H Gu, C Trapnell, J Donaghey, A Tsankov, ... Cell 153 (5), 1149-1163, 2013	509	2013
Long noncoding RNAs regulate adipogenesis L Sun, LA Goff, C Trapnell, R Alexander, KA Lo, E Hacisuleyman, ... Proceedings of the National Academy of Sciences 110 (9), 3387-3392, 2013	485	2013
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99^A SL Salzberg, DD Sommer, MC Schatz, AM Phillippy, PD Rabinowicz, ... BMC genomics 9, 1-16, 2008	436	2008
Predicting 3D genome folding from DNA sequence with Akita G Fudenberg, DR Kelley, KS Pollard Nature Methods 17 (11), 1111-1117, 2020	247	2020
Widespread RNA binding by chromatin-associated proteins D G Hendrickson, DR Kelley, D Tenen, B Bernstein, JL Rinn Genome biology 17, 1-18, 2016	246	2016
Gene prediction with Glimmer for metagenomic sequences augmented by classification and clustering DR Kelley, B Liu, AL Delcher, M Pop, SL Salzberg Nucleic Acids Research 40 (1), e9-e9, 2012	217	2012
Cross-species regulatory sequence activity prediction DR Kelley PLOS Computational Biology 16 (7), e1008050, 2020	205	2020
Solo: Doublet Identification in Single-Cell RNA-Seq via Semi-Supervised Deep Learning NJ Bernstein, NL Fong, I Lam, MA Roy, DG Hendrickson, DR Kelley Cell Systems 11 (1), 95-101. e5, 2020	195	2020
Genetic determinants and epigenetic effects of pioneer-factor occupancy J Donaghey, S Thakurela, J Charlton, JS Chen, ZD Smith, H Gu, R Pop, ... Nature genetics 50 (2), 250-258, 2018	186	2018
Murine single-cell RNA-seq reveals cell-identity-and tissue-specific trajectories of aging JC Kimmel, L Penland, ND Rubinstein, DG Hendrickson, DR Kelley, ... Genome research 29 (12), 2088-2103, 2019	152	2019
Clustering metagenomic sequences with interpolated Markov models D Kelley, S Salzberg BMC Bioinformatics 11 (1), 544, 2010	143	2010

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