| Higher-order inter-chromosomal hubs shape 3D genome organization in the nucleus SA Quinodoz, N Ollikainen, B Tabak, A Palla, JM Schmidt, E Detmar, ... Cell 174 (3), 744-757. e24, 2018 | 844 | 2018 |
| SARS-CoV-2 disrupts splicing, translation, and protein trafficking to suppress host defenses AK Banerjee, MR Blanco, EA Bruce, DD Honson, LM Chen, A Chow, ... Cell 183 (5), 1325-1339. e21, 2020 | 600 | 2020 |
| Long noncoding RNAs: an emerging link between gene regulation and nuclear organization S Quinodoz, M Guttman Trends in Cell Biology 24 (11), 651–663, 2014 | 354 | 2014 |
| RNA promotes the formation of spatial compartments in the nucleus SA Quinodoz, JW Jachowicz, P Bhat, N Ollikainen, AK Banerjee, ... Cell 184 (23), 5775-5790. e30, 2021 | 310 | 2021 |
| Single-cell measurement of higher-order 3D genome organization with scSPRITE MV Arrastia, JW Jachowicz, N Ollikainen, MS Curtis, C Lai, SA Quinodoz, ... Nature biotechnology 40 (1), 64-73, 2022 | 111* | 2022 |
| Genome organization around nuclear speckles drives mRNA splicing efficiency P Bhat, A Chow, B Emert, O Ettlin, SA Quinodoz, M Strehle, Y Takei, ... Nature 629 (8014), 1165-1173, 2024 | 63 | 2024 |
| Quorum sensing regulates the osmotic stress response in Vibrio harveyi JC van Kessel, ST Rutherford, JP Cong, S Quinodoz, J Healy, BL Bassler Journal of bacteriology 197 (1), 73-80, 2015 | 61 | 2015 |
| SPRITE: a genome-wide method for mapping higher-order 3D interactions in the nucleus using combinatorial split-and-pool barcoding SA Quinodoz, P Bhat, P Chovanec, JW Jachowicz, N Ollikainen, E Detmar, ... Nature protocols 17 (1), 36-75, 2022 | 52 | 2022 |
| Molecular time sharing through dynamic pulsing in single cells J Park, M Dies, Y Lin, S Hormoz, SE Smith-Unna, S Quinodoz, ... Cell systems 6 (2), 216-229. e15, 2018 | 51 | 2018 |
| Viscoelasticity and advective flow of RNA underlies nucleolar form and function JA Riback, JM Eeftens, DSW Lee, SA Quinodoz, A Donlic, N Orlovsky, ... Molecular cell 83 (17), 3095-3107. e9, 2023 | 40 | 2023 |
| Integrative genome modeling platform reveals essentiality of rare contact events in 3D genome organizations L Boninsegna, A Yildirim, G Polles, Y Zhan, SA Quinodoz, EH Finn, ... Nature methods 19 (8), 938-949, 2022 | 39 | 2022 |
| High-resolution mapping of multiway enhancer-promoter interactions regulating pathogen detection P Vangala, R Murphy, SA Quinodoz, K Gellatly, P McDonel, M Guttman, ... Molecular cell 80 (2), 359-373. e8, 2020 | 34 | 2020 |
| Essential roles for RNA in shaping nuclear organization SA Quinodoz, M Guttman Cold Spring Harbor Perspectives in Biology 14 (5), a039719, 2022 | 27 | 2022 |
| Viscoelastic RNA entanglement and advective flow underlies nucleolar form and function JA Riback, JM Eeftens, DS Lee, SA Quinodoz, L Beckers, LA Becker, ... Biophysical Journal 121 (3), 473a, 2022 | 24 | 2022 |
| Simultaneous mapping of 3D structure and nascent RNAs argues against nuclear compartments that preclude transcription IN Goronzy*, SA Quinodoz*, JW Jachowicz, N Ollikainen, P Bhat, ... Cell reports 41 (9), 111730, 2022 | 20 | 2022 |
| Noncoding RNAs: biology and applications—a Keystone Symposia report J Cable, E Heard, T Hirose, KV Prasanth, LL Chen, JE Henninger, ... Annals of the new York Academy of Sciences 1506 (1), 118-141, 2021 | 19 | 2021 |
| Size Matters! MA Thomas, S Quinodoz, EM Schötz Journal of Statistical Physics, 1-13, 2012 | 12 | 2012 |
| The More the Merrier? S Quinodoz, MA Thomas, J Dunkel, EM Schötz Journal of Statistical Physics 142 (6), 1324-1336, 2011 | 11 | 2011 |
| The genomic and cellular basis of biosynthetic innovation in rove beetles SA Kitchen, TH Naragon, A Brückner, MS Ladinsky, SA Quinodoz, ... Cell 187 (14), 3563-3584. e26, 2024 | 6 | 2024 |
| An integrated view of the structure and function of the human 4D nucleome J Dekker, BA Oksuz, Y Zhang, Y Wang, MK Minsk, S Kuang, L Yang, ... bioRxiv, 2024 | 3 | 2024 |
